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Report for CCDS18697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18697.1 Public Mus musculus 4 Lck 23 108 98 CCDS HistoryNCBI Gene:16818Re-query CCDS DB by CCDS ID:18697.1Re-query CCDS DB by GeneID:16818See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067240.10 ENSMUSP00000066209.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067240.10Link to Ensembl Protein Viewer:ENSMUSP00000066209.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067240Re-query CCDS DB by Protein ID:ENSMUSP00000066209
Original member Current member EBI ENSMUST00000102596.7 ENSMUSP00000099656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102596.7Link to Ensembl Protein Viewer:ENSMUSP00000099656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102596Re-query CCDS DB by Protein ID:ENSMUSP00000099656
Original member NCBI NM_001162433.1 NP_001155905.1 Updated not alive Link to Nucleotide Sequence:NM_001162433.1Link to Protein Sequence:NP_001155905.1Re-query CCDS DB by Nucleotide ID:NM_001162433Re-query CCDS DB by Protein ID:NP_001155905
Current member NCBI NM_001162433.2 NP_001155905.1 Accepted alive Link to Nucleotide Sequence:NM_001162433.2Link to Protein Sequence:NP_001155905.1Re-query CCDS DB by Nucleotide ID:NM_001162433Re-query CCDS DB by Protein ID:NP_001155905Link to BLAST:NP_001155905.1
Original member NCBI NM_010693.3 NP_034823.1 Updated not alive Link to Nucleotide Sequence:NM_010693.3Link to Protein Sequence:NP_034823.1Re-query CCDS DB by Nucleotide ID:NM_010693Re-query CCDS DB by Protein ID:NP_034823
Current member NCBI NM_010693.4 NP_034823.1 Accepted alive Link to Nucleotide Sequence:NM_010693.4Link to Protein Sequence:NP_034823.1Re-query CCDS DB by Nucleotide ID:NM_010693Re-query CCDS DB by Protein ID:NP_034823Link to BLAST:NP_034823.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155905.1 509 P06240 509 100% 0 0
NP_034823.1 509 P06240 509 100% 0 0

Chromosomal Locations for CCDS 18697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129548798 129549000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129551505 129551636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129551717 129551870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129551948 129552024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129555539 129555718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129555853 129556005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129556288 129556437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129556644 129556747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129557034 129557132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129557365 129557455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129557626 129557707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129558081 129558185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGGCTGTGTCTGCAGCTCAAACCCTGAAGATGACTGGATGGAGAACATTGACGTGTGTGAAAACTGCC
ACTATCCCATAGTCCCACTGGACAGCAAGATCTCGCTGCCCATCCGGAATGGCTCTGAAGTGCGGGACCC
ACTGGTCACCTATGAGGGATCTCTCCCACCAGCATCCCCGCTGCAAGACAACCTGGTTATCGCCCTGCAC
AGTTATGAGCCCTCCCATGATGGAGACTTGGGCTTTGAGAAGGGTGAACAGCTCCGAATCCTGGAGCAGA
GCGGTGAGTGGTGGAAGGCTCAGTCCCTGACGACTGGCCAAGAAGGCTTCATTCCCTTCAACTTCGTGGC
GAAAGCAAACAGCCTGGAGCCTGAACCTTGGTTCTTCAAGAATCTGAGCCGTAAGGACGCCGAGCGGCAG
CTTTTGGCGCCCGGGAACACGCATGGATCCTTCCTGATCCGGGAAAGCGAAAGCACTGCGGGGTCCTTTT
CCCTGTCGGTCAGAGACTTCGACCAGAACCAGGGAGAAGTGGTGAAACATTACAAGATCCGTAACCTAGA
CAACGGTGGCTTCTACATCTCCCCTCGTATCACTTTTCCCGGATTGCACGATCTAGTCCGCCATTACACC
AACGCCTCTGATGGGCTGTGCACAAAGTTGAGCCGTCCTTGCCAGACCCAGAAGCCCCAGAAACCATGGT
GGGAGGACGAATGGGAAGTTCCCAGGGAAACACTGAAGTTGGTGGAGCGGCTGGGAGCTGGCCAGTTCGG
GGAAGTGTGGATGGGGTACTACAACGGACACACGAAGGTGGCGGTGAAGAGTCTGAAACAAGGGAGCATG
TCCCCCGACGCCTTCCTGGCTGAGGCTAACCTCATGAAGCAGCTGCAGCACCCGCGGCTAGTCCGGCTTT
ATGCAGTGGTCACCCAGGAACCCATCTACATCATCACGGAATACATGGAGAACGGGAGCCTAGTAGATTT
TCTCAAGACTCCCTCGGGCATCAAGTTGAATGTCAACAAACTTTTGGACATGGCAGCCCAGATTGCAGAG
GGCATGGCGTTCATCGAAGAACAGAATTACATCCATCGGGACCTGCGCGCCGCCAACATCCTGGTGTCTG
ACACGCTGAGCTGCAAGATTGCAGACTTTGGCCTGGCGCGCCTCATTGAGGACAATGAGTACACGGCCCG
GGAGGGGGCCAAATTTCCCATTAAGTGGACAGCACCAGAAGCCATTAACTATGGGACCTTCACCATCAAG
TCAGACGTGTGGTCCTTCGGGATCTTGCTTACAGAGATCGTCACCCACGGTCGAATCCCTTACCCAGGAA
TGACCAACCCTGAAGTCATTCAGAACCTGGAGAGAGGCTACCGCATGGTGAGACCTGACAACTGTCCGGA
AGAGCTGTACCACCTCATGATGCTGTGCTGGAAGGAGCGCCCAGAGGACCGGCCCACGTTTGACTACCTT
CGGAGTGTTCTGGATGACTTCTTCACAGCCACAGAGGGCCAGTACCAGCCCCAGCCTTGA

Translation (509 aa):
MGCVCSSNPEDDWMENIDVCENCHYPIVPLDSKISLPIRNGSEVRDPLVTYEGSLPPASPLQDNLVIALH
SYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPEPWFFKNLSRKDAERQ
LLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHDLVRHYT
NASDGLCTKLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM
SPDAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLNVNKLLDMAAQIAE
GMAFIEEQNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK
SDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYHLMMLCWKERPEDRPTFDYL
RSVLDDFFTATEGQYQPQP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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