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Report for CCDS18662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18662.1 Public Mus musculus 4 Sfpq 23 108 98 CCDS HistoryNCBI Gene:71514Re-query CCDS DB by CCDS ID:18662.1Re-query CCDS DB by GeneID:71514See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030623.7 ENSMUSP00000030623.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030623.7Link to Ensembl Protein Viewer:ENSMUSP00000030623.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030623Re-query CCDS DB by Protein ID:ENSMUSP00000030623
Original member Current member NCBI NM_023603.3 NP_076092.1 Accepted alive Link to Nucleotide Sequence:NM_023603.3Link to Protein Sequence:NP_076092.1Re-query CCDS DB by Nucleotide ID:NM_023603Re-query CCDS DB by Protein ID:NP_076092Link to BLAST:NP_076092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076092.1 699 Q8VIJ6 699 100% 0 0

Chromosomal Locations for CCDS 18662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127021417 127022220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127022816 127023004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127023267 127023568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127023674 127023769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127025855 127026051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127026143 127026227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127026769 127026886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127027268 127027316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127027397 127027518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127029827 127029964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGTCTCGGGATCGGTTCCGGAGTCGCGGTGGCGGCGGTGGAGGCTTTCACCGGCGTGGAGGAGGTGGCG
GC
CGCGGCGGCCTTCACGACTTCCGCTCTCCGCCGCCGGGCATGGGCCTCAACCAGAACCGCGGCCCCAT
G
GGCCCGGGCCCTGGCGGCCCGAAGCCGCCGCTCCCGCCTCCACCTCCTCACCAGCAGCAGCAGCAGCCG
CCG
CCGCAGCAGCCTCCGCCGCAGCAGCCGCCGCCGCACCAGCAGCCGCCGCCGCACCAGCCGCCCCATC
AA
CAGCCCCCGCCTCCGCCGCAGGAATCCAAGCCCGTCGTCCCCCAAGGCCCCGGCTCGGCGCCGGGGGT
G
AGCAGTGCGCCTCCGCCGGCGGTCTCGGCTCCGCCCGCCAACCCCCCGACCACCGGCGCCCCTCCGGGC
CCT
GGTCCAACCCCGACTCCGCCGCCCGCCGTCCCCTCCACCGCCCCCGGACCGCCTCCCCCATCGACGC
CG
AGCAGCGGAGTCTCGACCACCCCTCCACAGACCGGCGGCCCTCCGCCACCGCCCGCCGGGGGCGCCGG
G
CCGGGGCCTAAGCCGGGGCCAGGCCCTGGCGGTCCAAAAGGCGGCAAGATGCCCGGTGGGCCTAAGCCT
GGA
GGTGGCCCGGGCATGGGCGCTCCTGGTGGCCACCCGAAGCCACCACACCGAGGTGGCGGCGAGCCCC
GT
GGGGGCCGGCAGCATCATGCGCCCTACCACCAGCAGCACCACCAGGGGCCCCCTCCCGGCGGACCGGG
A
CCGCGCACGGAGGAGAAGATCTCCGACTCGGAGGGATTTAAAGCCAACTTGTCTCTCTTGCGGAGGCCT
GGA
GAAAAAACTTACACACAGCGCTGTCGGTTGTTTGTGGGGAATCTACCTGCTGATATCACAGAGGATG
AA
TTCAAAAGACTGTTTGCTAAATACGGAGAACCCGGAGAAGTTTTTATCAACAAAGGCAAAGGGTTCGG
G
TTCATTAAGCTTGAATCTAGAGCCTTGGCTGAAATCGCCAAAGCTGAGCTTGATGATACTCCCATGAGA
GGT
AGACAGCTTCGGGTTCGATTTGCCACACACGCTGCAGCCCTGTCTGTTCGAAATCTCTCTCCTTATG
TT
TCCAACGAACTTTTGGAAGAGGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGA
T
GATCGCGGAAGATCTACAGGGAAAGGCATTGTTGAGTTTGCTTCCAAGCCAGCAGCAAGAAAAGCATTT
GAA
AGATGCAGTGAAGGTGTTTTCCTACTGACAACGACTCCTCGCCCAGTCATTGTGGAACCACTTGAAC
AG
TTAGATGACGAAGATGGTCTTCCTGAAAAGCTGGCCCAGAAGAATCCAATGTATCAAAAGGAGAGAGA
A
ACACCACCTCGTTTTGCTCAGCATGGCACATTTGAGTATGAATATTCTCAACGATGGAAGTCCTTGGAT
GAA
ATGGAAAAACAGCAAAGGGAACAAGTTGAAAAAAACATGAAGGATGCTAAAGACAAATTGGAAAGTG
AA
ATGGAAGATGCTTACCATGAACACCAAGCAAATCTTTTGCGCCAAGATCTGATGAGACGCCAGGAAGA
A
TTAAGGCGCATGGAGGAACTTCACAGTCAAGAAATGCAGAAACGTAAAGAAATGCAGTTGAGGCAAGAG
GAG
GAACGGCGTAGACGAGAGGAAGAGATGATGATTCGCCAACGTGAGATGGAAGAACAAATGAGACGCC
AA
CGAGAAGAAAGTTACAGCAGGATGGGCTACATGGATCCAAGAGAAAGAGACATGAGAATGGGTGGTGG
T
GGAACAATGAACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCACTAGGTGGTGGTGGT
GGC
ATAGGTTATGAAGCTAATCCTGGAGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGCGACA
TG
CGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGTCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCC
T
GGAACTCCAGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGGCCAAATAAAAAACCCCGATTTTAG


Translation (699 aa):
MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGGPKPPLPPPPPHQQQQQP
P
PQQPPPQQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGSAPGVSSAPPPAVSAPPANPPTTGAPPG
P
GPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPPPAGGAGPGPKPGPGPGGPKGGKMPGGPKP
G
GGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYHQQHHQGPPPGGPGPRTEEKISDSE
GFKANLSLLRRP
G
EKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKL
ESRALAEIAKAELDDTPMR
G
RQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAF
E
RCSEGVFLLT
TTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLD
E
MEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQ
DLMRRQEELRRMEELHSQEMQKRKEMQLRQE
E
ERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDP
RERDMRMGGGGTMNMGDPYGSGGQKFPPLGGGG
G
IGYEANPGVPPATMSGSMMGSDM
RTERFGQGGAGPVGGQGPRGMGPGTPAGYGRGREEYEGPNKKPRF



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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