NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18370.1 Public Mus musculus 4 Cyp2j9 23 108 98 CCDS HistoryNCBI Gene:74519Re-query CCDS DB by CCDS ID:18370.1Re-query CCDS DB by GeneID:74519See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18370.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055693.8 ENSMUSP00000050464.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055693.8Link to Ensembl Protein Viewer:ENSMUSP00000050464.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055693Re-query CCDS DB by Protein ID:ENSMUSP00000050464
Original member NCBI NM_028979.2 NP_083255.1 Updated not alive Link to Nucleotide Sequence:NM_028979.2Link to Protein Sequence:NP_083255.1Re-query CCDS DB by Nucleotide ID:NM_028979Re-query CCDS DB by Protein ID:NP_083255
Current member NCBI NM_028979.3 NP_083255.1 Accepted alive Link to Nucleotide Sequence:NM_028979.3Link to Protein Sequence:NP_083255.1Re-query CCDS DB by Nucleotide ID:NM_028979Re-query CCDS DB by Protein ID:NP_083255Link to BLAST:NP_083255.1

Chromosomal Locations for CCDS 18370.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 96568724 96568902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96571935 96572073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96573852 96574039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96577592 96577733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96579387 96579563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96583409 96583569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96583977 96584126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96585829 96585991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96591136 96591345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGCTTGCGGCAGCCGGCTCCCTAGTGGCTGCCATTTGGGCTGCGCTCCATCTCCGGATTTTGCTGCTGT
CTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCC
AATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGGACCCCAAGCAGCCCCACCTATCCCTTCAGCAG
TTTGTGAAGAAATACGGGAATGTTCTAAGCCTGGATTTTGCTAACATACCTTCAGTGGTTATAACTGGCA
TGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCTTCTCCG
AAAACATCTCTTTAACAAAAATGGATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTT
GCCCTGATGACACTGAGGAACTTTGGACTAGGAAAGAGGAGCTTAGAGGAACGAATACAAGAGGAGGCTC
ACTACCTTGTGGAGGCCATAAGAGATGAGGGAGGACAGCCTTTTGACCCTCACTTCAATATCAGCAATGC
AGTTTCCAACATAATTTGCTCTATTACCTTTGGGGAGCGCTTTGACTACCATGACAGTCAGTTTCAGGAG
ATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAACTTTACAATATCTTTC
CAAGGATACTTCAGTATCTTCCTGGATCACACCAGACACTTTTCAGAAACTGGAGAAAACTGCAATTGTT
TGTTTCCGATATTGTTAACAATCACCGGAGAGACTGGGATCCAGATGAGCCGAGAGACTTCATTGATGCT
TTCCTCACAGAAATGACAAAGTACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCA
GCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCTACAACACTGCGCTGGGCTCTCCTCTGCAT
GGCCCTCTACCCAGAAGTCCAAGAAAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAG
CCGAATCTGGCAGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGGATGGGCA
ACATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAA
GGGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGATACA
TTCAATCCAGAGCACTTTCTGGAGAATGGACAATTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGG
GAAAACGTGCTTGTCTTGGAGAACAACTGGCCAGGTCTGAGCTGTTCATTTTTATCACTACTCTTTTCCA
AAAATTTACCTTCAAGCCCCCAGTCAATGAGAAGCTAAGTCTGCAGTTCAGAATGGCTGCAACCGTTTCC
CCAGTCAGTCACCGCCTTTGTGCAATTCCTAGGCTGTGA

Translation (502 aa):
MLAAAGSLVAAIWAALHLRILLLSAVTFLFLADFLKNRRPKNYPPGPMRLPFVGCLFHLDPKQPHLSLQQ
FVKKYGNVLSLDFANIPSVVITGMPLIKEIFTQMEHNFMNRPVTLLRKHLFNKNGLIFSSDQTWKEQRRF
ALMTLRNFGLGKRSLEERIQEEAHYLVEAIRDEGGQPFDPHFNISNAVSNIICSITFGERFDYHDSQFQE
MLRLLDEAMCLESSMMCQLYNIFPRILQYLPGSHQTLFRNWRKLQLFVSDIVNNHRRDWDPDEPRDFIDA
FLTEMTKYPDKTTTSFNEENLICSTLDLFFAGTETTSTTLRWALLCMALYPEVQEKMQAEIDRVIGQARQ
PNLADRDSMPYTNAVIHEVQRMGNIIPFNVPREVAVDTQLAGFNLPKGIMVLSNLTALHRDPSEWTTPDT
FNPEHFLENGQFKKRESFLPFSMGKRACLGEQLARSELFIFITTLFQKFTFKPPVNEKLSLQFRMAATVS
PVSHRLCAIPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH