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Report for CCDS18367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18367.1 Public Mus musculus 4 Hook1 23 108 98 CCDS HistoryNCBI Gene:77963Re-query CCDS DB by CCDS ID:18367.1Re-query CCDS DB by GeneID:77963See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030306.13 ENSMUSP00000030306.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030306.13Link to Ensembl Protein Viewer:ENSMUSP00000030306.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030306Re-query CCDS DB by Protein ID:ENSMUSP00000030306
Original member Current member NCBI NM_030014.2 NP_084290.1 Accepted alive Link to Nucleotide Sequence:NM_030014.2Link to Protein Sequence:NP_084290.1Re-query CCDS DB by Nucleotide ID:NM_030014Re-query CCDS DB by Protein ID:NP_084290Link to BLAST:NP_084290.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084290.1 728 Q8BIL5-1 728 100% 0 0

Chromosomal Locations for CCDS 18367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 95967494 95967556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95974386 95974471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95989638 95989710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95992149 95992199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95993066 95993198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95995764 95995831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95996759 95996821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95998695 95998778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96001170 96001336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96002444 96002584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96003482 96003683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96004297 96004407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96009302 96009389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96009469 96009529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96013198 96013338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96014808 96014901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96016409 96016443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96016943 96017025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96017588 96017688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96019603 96019704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96021568 96021636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 96022167 96022337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGAGGACCCGCAGCCGCTGCCACAGTCCGAGCTGCCGCTGTGTGACAGCCTCATCATCTGGCTGCAGA
CATTCAAGACTGCCTCACCTTGTCAAGATGTCAAACAGCTGACTAATGGAGTGACCATGGCACAAGTTCT
TCATCAAATTGATGTAGCTTGGTTCAGCGAATCTTGGTTAAGCCGAATTAAAGATGATGTTGGAGACAAC
TGGAGAATAAAGGCTAGTAACCTGAAGAAGGTCCTCCATGGAATTACAAGTTACTATCATGAGTTTTTGG
GGCAGCAGATTTCTGAAGAACTTATCCCTGATTTAAATCAAATCACTGAGTGTGCAGATCCTGTGGAGCT
TGGGAGGTTGCTTCAGCTAATTCTAGGATGTGCAGTCAACTGTGAAAAGAAGCAAGAACATATTAAAAAT
ATAATGACCCTGGAAGAATCTGTTCAACATGTGGTCATGACTGCAATTCAGGAGCTGATGAGTAAAGAAA
TAGTGATCTCTCCTGCAAGTGACACGGTGGGAGAATTAGAACAGCAGCTTAAAAGGGCTTTAGAAGAGCT
TCAGGAGGCCATAGCAGAAAAGGAAGAGCTGAAGCAGAGGTGCCAGGAACTGGATATGCAGGTGACTACA
CTTCAGGATGAGAAGAATTCACTGGTCTCTGAGAATGAGATGATGAATGAAAAGCTTGACCAGTTGGATG
GCTCTTTTGATGATCCAAATACAATGGTTGCAAAGAAATATTTTCACGTACAGCTACAACTAGAACAATT
ACAAGAAGAAAACTATAGGCTTGAAGCTGCAAAAGATGATTACCGTGTTCACTGTGAGGAACTTGAAAAG
CAACTGATTGAATTTCAGCACAGGAATGATGAGCTGACGAGCCTTGCTGAAGAGACCAGAGCCCTAAAAG
ATGAGATAGATGTTCTTAGGGCTACGTCAGACAAAGCAAATAAACTGGAGTCAACAGTGGAGGTATATCG
TCAGAAGCTACAAGATTTAAATGACCTCCGCAAACAGGTGAAATCTTTACAGGAGACAAATATGATGTAT
ATGCATAACACTGTGAGCTTGGAAGAAGAGCTGAAGAAGGCCAACGCAGCTCGGGCACAGTTAGAGACCT
ATAAGCGCCAGGTTCAGGACCTTCACACAAAGCTTTCCTCTGAATCCAAAAGGGCAGATACACTAGCATT
TGAAATGAAGAGGCTTGAAGAAAAACATGAAACTTTACTCAAGGAAAAAGAGCGATTGATAGAACAGCGT
GACACTCTGAAGGAGACGAATGAGGAGCTGCGGTGCTCAAAAGCACAGCAAGATCACTTAAACCAAGCTG
ATGCATCTGCTACAAAAAGTTATGAAAATCTTGCTGCTGAGATCATGCCCGTGGAATACAGAGAGGTGTT
CATTCGACTCCAGCATGAAAACAAAATGCTTCGCCTACAGCAAGAAGGGACGGAGAATGAACGCATTGAG
CAGCTGCAGGAGCAACTGGAGCAGAAGCACCGCAAGATGAATGAGCTGGAAACCGAGCAAAGGTTGAGCA
AAGAGCGCATCGGAGAACTACAGCAGCAAATTGAGGACCTCCAGAAGTCATTACAAGAACAGGGCTCTAA
GTCTGAAGGTGAAAGTTCCAGCAAATTAAAGCAGAAGTTGGAAGCTCATATGGAAAAACTAACAGAAGTC
CATGAAGAATTACAGAAGAAACAGGAGCTCATTGAAGACCTTCAGCCAGATATAAGTCAGAATGCCCAAA
AGATCAGTGAACTTGAAGCGGCTCTTCAGAAGAAAGATGAAGACATGAAAGCAATGGAGGAGAGATACAA
AATGTACTTAGAGAAAGCCAGGAATGTAATAAAAACTTTAGATCCCAAATTAAATCCAGCATCAGCAGAA
ATAATGTTACTCAGAAAGCAGCTGGCGGAGAAGGAAAGAAGAATTGAGATTCTAGAGAGTGAATGTAAAG
TAGCAAAATTGAGGGATTATGAGGAAAAACTCATTGTTTCTGCCTGGTATAACAAGAGCCTGGCGTTTCA
GAAATTGGGCATGGAGTCTCGGCTGGTGAGTGGTGCTAGTGCTTGCAAAGACAGCGTTGCGGCTGCTCCT
GCACGTTCCTTCTTAGCGCAGCAGCGGCACATCACCAACACCCGAAGAAACCTCTCTGTTAAGGTCCCAG
CTGCAGCATCTGACTAG

Translation (728 aa):
MEDPQPLPQSELPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDN
WRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKN
IMTLEESVQHVVMTAIQELMSKEIVISPASDTVGELEQQLKRALEELQEAIAEKEELKQRCQELDMQVTT
LQDEKNSLVSENEMMNEKLDQLDGSFDDPNTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEK
QLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMY
MHNTVSLEEELKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQR
DTLKETNEELRCSKAQQDHLNQADASATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGTENERIE
QLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEV
HEELQKKQELIEDLQPDISQNAQKISELEAALQKKDEDMKAMEERYKMYLEKARNVIKTLDPKLNPASAE
IMLLRKQLAEKERRIEILESECKVAKLRDYEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAP
ARSFLAQQRHITNTRRNLSVKVPAAASD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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