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Report for CCDS1819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1819.1 Public Homo sapiens 2 SLC3A1 24 110 108 CCDS HistoryNCBI Gene:6519Re-query CCDS DB by CCDS ID:1819.1Re-query CCDS DB by GeneID:6519See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260649.11 ENSP00000260649.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260649.11Link to Ensembl Protein Viewer:ENSP00000260649.6Re-query CCDS DB by Nucleotide ID:ENST00000260649Re-query CCDS DB by Protein ID:ENSP00000260649
Original member Current member NCBI NM_000341.4 NP_000332.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000341.4Link to Protein Sequence:NP_000332.2Re-query CCDS DB by Nucleotide ID:NM_000341Re-query CCDS DB by Protein ID:NP_000332Link to BLAST:NP_000332.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000332.2 685 Q07837-1 685 100% 0 0

Chromosomal Locations for CCDS 1819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44275536 44275965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44280716 44280895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44281387 44281541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44286032 44286157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44299971 44300090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44301003 44301127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44304143 44304338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44312586 44312753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44313835 44313951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44320199 44320639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGCTGAAGATAAAAGCAAGAGAGACTCCATCGAGATGAGTATGAAGGGATGCCAGACAAACAACGGGT
TTGTCCATAATGAAGACATTCTGGAGCAGACCCCGGATCCAGGAAGCTCAACAGACAACCTGAAGCACAG
CACCAGGGGCATCCTTGGCTCCCAGGAGCCCGACTTCAAGGGCGTCCAGCCCTATGCGGGGATGCCCAAG
GAGGTGCTGTTCCAGTTCTCTGGCCAGGCCCGCTACCGCATACCTCGGGAGATCCTCTTCTGGCTCACAG
TGGCTTCTGTGCTGGTGCTCATCGCGGCCACCATAGCCATCATTGCCCTCTCTCCAAAGTGCCTAGACTG
GTGGCAGGAGGGGCCCATGTACCAGATCTACCCAAGGTCTTTCAAGGACAGTAACAAGGATGGGAACGGA
GATCTGAAAGGTATTCAAGATAAACTGGACTACATCACAGCTTTAAATATAAAAACTGTTTGGATTACTT
CATTTTATAAATCGTCCCTTAAAGATTTCAGATATGGTGTTGAAGATTTCCGGGAAGTTGATCCCATTTT
TGGAACGATGGAAGATTTTGAGAATCTGGTTGCAGCCATACATGATAAAGGTTTAAAATTAATCATCGAT
TTCATACCAAACCACACGAGTGATAAACATATTTGGTTTCAATTGAGTCGGACACGGACAGGAAAATATA
CTGATTATTATATCTGGCATGACTGTACCCATGAAAATGGCAAAACCATTCCACCCAACAACTGGTTAAG
TGTGTATGGAAACTCCAGTTGGCACTTTGACGAAGTGCGAAACCAATGTTATTTTCATCAGTTTATGAAA
GAGCAACCTGATTTAAATTTCCGCAATCCTGATGTTCAAGAAGAAATAAAAGAAATTTTACGGTTCTGGC
TCACAAAGGGTGTTGATGGTTTTAGTTTGGATGCTGTTAAATTCCTCCTAGAAGCAAAGCACCTGAGAGA
TGAGATCCAAGTAAATAAGACCCAAATCCCGGACACGGTCACACAATACTCGGAGCTGTACCATGACTTC
ACCACCACGCAGGTGGGAATGCACGACATTGTCCGCAGCTTCCGGCAGACCATGGACCAATACAGCACGG
AGCCCGGCAGATACAGGTTCATGGGGACTGAAGCCTATGCAGAGAGTATTGACAGGACCGTGATGTACTA
TGGATTGCCATTTATCCAAGAAGCTGATTTTCCCTTCAACAATTACCTCAGCATGCTAGACACTGTTTCT
GGGAACAGCGTGTATGAGGTTATCACATCCTGGATGGAAAACATGCCAGAAGGAAAATGGCCTAACTGGA
TGATTGGTGGACCAGACAGTTCACGGCTGACTTCGCGTTTGGGGAATCAGTATGTCAACGTGATGAACAT
GCTTCTTTTCACACTCCCTGGAACTCCTATAACTTACTATGGAGAAGAAATTGGAATGGGAAATATTGTA
GCCGCAAATCTCAATGAAAGCTATGATATTAATACCCTTCGCTCAAAGTCACCAATGCAGTGGGACAATA
GTTCAAATGCTGGTTTTTCTGAAGCTAGTAACACCTGGTTACCTACCAATTCAGATTACCACACTGTGAA
TGTTGATGTCCAAAAGACTCAGCCCAGATCGGCTTTGAAGTTATATCAAGATTTAAGTCTACTTCATGCC
AATGAGCTACTCCTCAACAGGGGCTGGTTTTGCCATTTGAGGAATGACAGCCACTATGTTGTGTACACAA
GAGAGCTGGATGGCATCGACAGAATCTTTATCGTGGTTCTGAATTTTGGAGAATCAACACTGTTAAATCT
ACATAATATGATTTCGGGCCTTCCCGCTAAAATGAGAATAAGGTTAAGTACCAATTCTGCCGACAAAGGC
AGTAAAGTTGATACAAGTGGCATTTTTCTGGACAAGGGAGAGGGACTCATCTTTGAACACAACACGAAGA
ATCTCCTTCATCGCCAAACAGCTTTCAGAGATAGATGCTTTGTTTCCAATCGAGCATGCTATTCCAGTGT
ACTGAACATACTGTATACCTCGTGTTAG

Translation (685 aa):
MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPK
EVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQEGPMYQIYPRSFKDSNKDGNG
DLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLVAAIHDKGLKLIID
FIPNHTSDKHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMK
EQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDF
TTTQVGMHDIVRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIV
AANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHA
NELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTLLNLHNMISGLPAKMRIRLSTNSADKG
SKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSNRACYSSVLNILYTSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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