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Report for CCDS18054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18054.1 Public Mus musculus 4 Nfx1 23 108 98 CCDS HistoryNCBI Gene:74164Re-query CCDS DB by CCDS ID:18054.1Re-query CCDS DB by GeneID:74164See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098143.10 ENSMUSP00000095747.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098143.10Link to Ensembl Protein Viewer:ENSMUSP00000095747.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098143Re-query CCDS DB by Protein ID:ENSMUSP00000095747
Original member Current member NCBI NM_023739.3 NP_076228.2 Accepted alive Link to Nucleotide Sequence:NM_023739.3Link to Protein Sequence:NP_076228.2Re-query CCDS DB by Nucleotide ID:NM_023739Re-query CCDS DB by Protein ID:NP_076228Link to BLAST:NP_076228.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076228.2 1114 B1AY10-1 1114 100% 0 0

Chromosomal Locations for CCDS 18054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40971035 40971059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40976353 40977342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40984893 40985051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40986693 40986770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40988622 40988727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40990793 40990864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40991744 40991883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40993759 40993858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40993963 40994180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40996815 40996912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40999685 40999715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41003018 41003097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41004328 41004436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41004826 41004945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41009190 41009269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41015203 41015433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41016077 41016150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41017972 41018073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41018448 41018489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41021749 41021847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41022260 41022326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41023614 41023759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41024474 41024578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41024801 41024873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3345 nt):
ATGGCGGAGGCGCCTCCGGTCTCAGGCACTTTTAAATTCAATACAGATGCTGCTGAGTTCATTCCTCAGG
AGAGAAAAACTTCTGGTCTAAATTGTGGGACCCAAAGAAGACTAGATTCTAGTAGGATTGGCAGAAGAAA
TTATAGTTCCTCGCCTCCCTGTCACCTTCCTAGACACATCCCTTATGAAGACATCTCTGCTGTTCATCAG
CACAGTTATGCCTCTGGAAGCAAACCTAAGAGTCCCCAGGGTTTTTTCCAGTCATCTAATAAATCACTCA
AGAACCATGGCCTTCAGAATCAGCCATGGCAGAAAGCAAGGAATGAAAAGCACCAAAACAGAAACAAGAA
AGCACAAGGGCTCTCTGAGCAGACGTCAGATACATCTAGTTTAGAAAGTGTAGCCAGGTCAGAGAGTGGA
ACAAACCCGAGAGAGCACAGCCCTTCCGAGAGTGAGAAGGAGGTGGTTATCGCAGATCCCAGGGGAGCGA
AACCCAAAAAAGCAGCACAGCTTACATACAACTATGGCAGAGGACCAAAGGCCAAAGGGAGACTCAGAAG
CGAGTGGGGTAATAGAATGAGCCCAAAGTCTGAGGACGAAAATACCAGACCCGTGGCGATTTCCCACACT
GACTCTTCAGATGCCTCCTGTAGAAAACCTGTAGTGGATCCATGTGTGTGCAGGCGGAATGAGCAGAGAA
GATATCCCCAGAAAAGGCCTCCCTGGGAAGTGGAAGGGGCCAGACCACGGCCAGGCAGGAACCCACCAAA
ACAGGAGAGTCAGCGGCATATAAATGCAGGGCCCAAAACCAACATGTCCCCCATTCCAAAGGATAATCTT
AGAGAAAGACCAACGAAGTCAGCCTGTGACACTGGGAATTTGGCAGTTGTCAGCAAGTCTTCGAGAAGGG
TTAACCAAGAGAAAACTGCTGTAAGGAGACAGGATCCCCAAGTGCTATCTCCTTTTCCCAGAGGCAAACA
GAACCATATGCTGAAGAATGTGGAAACACATACAGGTTCCCTGATTGAGCAGCTAACTACAGAAAAATAC
GAGTGTATGGTATGCTGTGAGTTGGTTCAGGTCACAGCCCCGGTGTGGAGCTGTCAGAGCTGTTTTCATG
TCTTTCATCTGAACTGCATCAAGAAGTGGGCACGCTCTCCAGCATCGCATGCAGATGGCCAGAGTGGTTG
GAGGTGCCCTGCTTGTCAGAATGTTTCTGCACATGTTCCCAATACCTATACTTGTTTCTGTGGCAAAGTA
AAGAATCCTGAATGGAGCAGAAATGAAATTCCACATAGTTGTGGTGAGGTTTGTAGAAAGAAACAGCCTG
GCCAGGACTGTCCACATTCCTGTAACCTTCTCTGCCATCCTGGACCCTGCCCACCCTGCCCTGCTTTTAC
AACTAAAACATGTGAATGTGGACGGACCAGGCACACGGTTCGCTGTGGTCAGCCTGTCTCAGTCCACTGT
TCTAATGCATGTGAGAATATCTTGAACTGTGGTCAGCACCACTGTGCTGAGCTGTGCCATGGGGGTCAAT
GCCAGCCTTGTCGGATCATACTGAACCAGGTGTGCTACTGTGGCAGCACCTCCCGAGATGTGTTGTGTGG
AACCGATGTGGGAAAGTCTGATGGATTTGGGGACTTCAGCTGTTTAAAGATATGTGGCAAGGACTTGAAG
TGTGGGAGCCATACCTGTTCTCAGGTTTGCCACCCTCAGCCGTGTCAGCCTTGCCCACGGCTCCCCCATT
TGGTGCGATACTGCCCTTGCGGCCAAACACCTCTCAGCCAGTTGCTGGAACATGGAAGTAATGCTCGGAA
AACATGCATGGATCCTGTCCCTTCCTGTGGAAAAGTGTGTGGCAAACCCTTGGCCTGTGGTTCCTCAGAT
TTCATCCACACCTGTGAAAAGCTTTGCCATGAAGGAGACTGTGGGCCGTGCTCTCGCACATCAGTCATTT
CCTGCAGATGCTCCTTCAGAACAAAGGAACTTCCGTGTACCAGTCTTAAAAGTGAAGATGCTACATTTAT
GTGCGACAAACGGTGTAACAAGAAACGATTGTGCGGACGGCATAAATGTAACGAGATCTGCTGTGTGGAC
AAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGCTGTGGCCTTCATCGGTGTGAAGAACCTT
GTCATCGAGGGAACTGTCAGACCTGCTGGCAAGCCAGCTTTGATGAATTAACCTGCCACTGTGGCGCCTC
TGTGATCTACCCACCAGTTCCCTGTGGGACTAGGCCTCCTGAGTGTACCCAAACCTGTGCCAGGATCCAT
GAATGTGACCATCCAGTATATCATTCTTGTCATAGCGAGGAGAAGTGTCCCCCTTGTACTTTCCTAACTC
AGAAGTGGTGCATGGGCAAGCATGAGTTACGAAGCAACATCCCCTGTCACCTGGTTGATATCTCTTGCGG
ATTACCCTGCAGTGCCATGCTACCCTGTGGGATGCACAAATGTCAAAGACTTTGTCACAAAGGAGAATGT
CTTGTGGATGAGGCCTGCAAGCAGCCCTGTACCACACCCAGAGGTGACTGTGGCCACCCATGTATGGCAC
CCTGCCACCCCAGTTTACCCTGCCCTGTGACAGCTTGTAAAGCCAAGGTAGAGTTACAGTGTGAATGTGG
AAGAAGAAAGGAGATGGTGATTTGCTCTGAAGCATCGGGGACTTATCAAAGAATAGTTGCTATTTCTATG
GCCTCTAAAATAACGGACATGCAGCTTGGAGACTCAGTGGAGATCAGCAAGCTCATTACCAAGAAGGAAG
TCCAACAAGCCAGGTTGCAGTGTGATGAGGAGTGTGCTGCCCTGGAAAGGAGAAAGAGACTGGCAGAGGC
CTTCGACATCACTGACGATTCTGATCCTTTCAATGTACGCTCTTCAGCATCGAAATTCAGTGACAGTTTG
AAAGACGATGCCAGGAAAGACTTAAAGTTTGTCAGCGACGTTGAGAAGGAAATGGAAACGCTCGTGGAGG
CCGTGAATAAGGGCAAGAATAACAAGAAAAGCCACTGCTTCCCCCCCATGAACAGAGACCACCGCCGAAT
CATCCATGACCTGGCCCAGGTTTATGGCCTGGAGAGCATAAGCTATGACAGCGAACCAAAGCGCAATGTC
GTGGTCACTGCCGTCAGAGGGAAGTCTGTTTGTCCTCCTACCACGCTGACCAGTGTGATTGAAAGGGAGA
CACAGACACGGCCGCCACCACCAATTCCTCATCACCGACACCAGGCAGACAAGGCTCCCGGGAGCAGTAC
TTTACAGAAGATAGTGAAGGAGGCCGTGATTGACTACTTTGATGTCCAGGATTGA

Translation (1114 aa):
MAEAPPVSGTFKFNTDAAEFIPQERKTSGLNCGTQRRLDSSRIGRRNYSSSPPCHLPRHIPYEDISAVHQ
HSYASGSKPKSPQGFFQSSNKSLKNHGLQNQPWQKARNEKHQNRNKKAQGLSEQTSDTSSLESVARSESG
TNPREHSPSESEKEVVIADPRGAKPKKAAQLTYNYGRGPKAKGRLRSEWGNRMSPKSEDENTRPVAISHT
DSSDASCRKPVVDPCVCRRNEQRRYPQKRPPWEVEGARPRPGRNPPKQESQRHINAGPKTNMSPIPKDNL
RERPTKSACDTGNLAVVSKSSRRVNQEKTAVRRQDPQVLSPFPRGKQNHMLKNVETHTGSLIEQLTTEKY
ECMVCCELVQVTAPVWSCQSCFHVFHLNCIKKWARSPASHADGQSGWRCPACQNVSAHVPNTYTCFCGKV
KNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFTTKTCECGRTRHTVRCGQPVSVHC
SNACENILNCGQHHCAELCHGGQCQPCRIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFSCLKICGKDLK
CGSHTCSQVCHPQPCQPCPRLPHLVRYCPCGQTPLSQLLEHGSNARKTCMDPVPSCGKVCGKPLACGSSD
FIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVD
KEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARIH
ECDHPVYHSCHSEEKCPPCTFLTQKWCMGKHELRSNIPCHLVDISCGLPCSAMLPCGMHKCQRLCHKGEC
LVDEACKQPCTTPRGDCGHPCMAPCHPSLPCPVTACKAKVELQCECGRRKEMVICSEASGTYQRIVAISM
ASKITDMQLGDSVEISKLITKKEVQQARLQCDEECAALERRKRLAEAFDITDDSDPFNVRSSASKFSDSL
KDDARKDLKFVSDVEKEMETLVEAVNKGKNNKKSHCFPPMNRDHRRIIHDLAQVYGLESISYDSEPKRNV
VVTAVRGKSVCPPTTLTSVIERETQTRPPPPIPHHRHQADKAPGSSTLQKIVKEAVIDYFDVQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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