NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17962.1 Public Mus musculus 4 Plekhf2 23 108 98 CCDS HistoryNCBI Gene:71801Re-query CCDS DB by CCDS ID:17962.1Re-query CCDS DB by GeneID:71801See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054776.3 ENSMUSP00000054745.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054776.3Link to Ensembl Protein Viewer:ENSMUSP00000054745.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054776Re-query CCDS DB by Protein ID:ENSMUSP00000054745
Original member Current member NCBI NM_175175.4 NP_780384.1 Accepted alive Link to Nucleotide Sequence:NM_175175.4Link to Protein Sequence:NP_780384.1Re-query CCDS DB by Nucleotide ID:NM_175175Re-query CCDS DB by Protein ID:NP_780384Link to BLAST:NP_780384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780384.1 249 Q91WB4 249 100% 0 0

Chromosomal Locations for CCDS 17962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 10990591 10991340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGTGGATCGCCTGGCAAACAGTGAGGCGAATACTAGACGCATAAGTATTGTGGAGAGCTGTTTTGGAG
CCGCTGGTCAGCCCTTGACCATCCCTGGGCGAGTGCTTATTGGAGAAGGAGTGTTGACTAAGTTGTGCAG
AAAGAAGCCTAAAGCAAGGCAGTTTTTCTTATTTAATGATATTCTAGTATACGGCAATATTGTTATCCAG
AAGAAAAAATACAACAAACAGCATATTATTCCCTTGGAAAATGTCACCATTGATTCCATCAAAGATGAAG
GGGAATTACGGAATGGATGGCTTATTAAGACACCGACTAAGTCGTTTGCAGTTTATGCTGCCACTGCCAC
GGAGAAGTCAGAGTGGATGAATCACATAAATAAGTGTGTCACTGATTTACTCTCCAAAAGTGGGAAGACG
CCCAGCAACGAGCATGCTGCTGTCTGGGTTCCTGACTCTGAGGCCACCGTGTGTATGCGCTGTCAGAAAG
CAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGTTTGTGGTCCCTGCTC
TGAAAAGCGATTTCTTCTTCCCAGCCAGTCTTCTAAGCCTGTGCGGATTTGTGACTTCTGCTATGACCTG
CTTTCCACGGGGGACATGGCCGCGTGTCAGCCGACTAGATCAGACTCTTATAGTCAGTCGTTGAAGTCTC
CTTTAAATGATGCATCTGATGACGACGACGATGATGATAGCAGTGACTAA

Translation (249 aa):
MVDRLANSEANTRRISIVESCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFNDILVYGNIVIQ
KKKYNKQHIIPLENVTIDSIKDEGELRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKT
PSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDL
LSTGDMAACQPTRSDSYSQSLKSPLNDASDDDDDDDSSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH