NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17935.1 Public Mus musculus 3 Lrrc40 23 108 98 CCDS HistoryNCBI Gene:67144Re-query CCDS DB by CCDS ID:17935.1Re-query CCDS DB by GeneID:67144See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072080.9 ENSMUSP00000071956.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072080.9Link to Ensembl Protein Viewer:ENSMUSP00000071956.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072080Re-query CCDS DB by Protein ID:ENSMUSP00000071956
Original member NCBI NM_024194.6 NP_077156.2 Updated not alive Link to Nucleotide Sequence:NM_024194.6Link to Protein Sequence:NP_077156.2Re-query CCDS DB by Nucleotide ID:NM_024194Re-query CCDS DB by Protein ID:NP_077156
Current member NCBI NM_024194.7 NP_077156.2 Accepted alive Link to Nucleotide Sequence:NM_024194.7Link to Protein Sequence:NP_077156.2Re-query CCDS DB by Nucleotide ID:NM_024194Re-query CCDS DB by Protein ID:NP_077156Link to BLAST:NP_077156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077156.2 602 Q9CRC8 602 99.6678% 0 2

Chromosomal Locations for CCDS 17935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158036726 158036876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158040441 158040622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158041586 158041659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158043561 158043690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158048401 158048524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158051697 158051839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158052764 158052936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158054581 158054668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158054786 158054831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158055718 158055826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158058670 158058777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158061238 158061348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158062649 158062726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158063684 158063869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158066113 158066218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGTCGCGCCAGCTGAGAGCCCCTAGGTTTGACCCTCGTGCGGGATTCCACGCGGAGGGCAAGGACAGAG
GCCCCTCTGTTCCCCAGGGCCTGCTGAAGGCAGCGAGAAGCAGCGGCCAACTCAACTTGGCGGGAAGGAA
CCTCGGGGAAGTCCCTCAGTGTGTTTGGAGAATAAATGTGGACATTCCTGAAGAGGCTAATCAGAATCTT
TCATTCAGTTCTACTGAACGATGGTGGGATCAGACAGATCTGACCAAACTCATCATCTCCAGCAATAAAC
TTCAGTCTCTCTCTGATGACCTCCGACTCTTGCCTGCCCTTACTGTTCTTGATATACATGATAATCAGCT
GACATCTCTTCCTTCAGCTATAAGAGAGCTAGACAATCTTCAGAAACTTAATGTCAGCCATAACAAACTG
AAAATACTGCCTGAAGAAATTACAAGCTTAAAAAACCTGAGGACGCTGCACCTCCAGCACAATGAGCTGA
CTTGCATCCCCGAGGGATTTGAGCATCTTTCCTGCTTAGAAGATTTAGATCTTTCAAGCAATCGTCTTGC
AACTGTGCCTGCTGATTTTGCTTTGCTGTCCAGTCTGTTGCGACTCAATCTTTCCAGTAACCAGCTGAAG
AATTTGCCAGCAGAAATAAGCAGAATGAAAAGATTAAAGCACTTGGATTGTGATGCCAATCTCCTGGAGA
CTGTGCCTCCTGATGTGGGTAGCATGGAATCACTGGAATTGCTTTATTTGCGGAGGAATAAATTGCGTGT
TCTACCTGAATTTCCTTCTTGTAGGCAGCTAAAGGAATTACACCTAGCTGAAAACCAGATAGAGAAGTTA
GGGGCAGAGCATCTTCAGCACCTGCAGGCCATCCTTGTCCTGGACCTAAGGGGCAATAAGCTGCGGTCTG
TCCCTGAGGAAATGGCCCTGCTGCAGTCTTTGGAAAGGCTTGACCTGAGCAACAATGATATTAGTAGTCT
GCCCTGCTCATTGGGAAATCTTCATTTGAAATTCCTGGCACTAGAAGGAAATCCTCTAAGAACCATTCGA
AGAGAAATTATAGCTAAAGGAACTCAAGAAGTTCTAAAATACCTGCGCAGCAAGATCAAAGATGATAGAA
CCAATCAAAATGATTCTGTTCCTGAGACTGCCATGACACTACCAAGTGAAGCCAGAGTCAATATCCATGC
CATAGCCACACTAAAGCTGCTAGATTATAGTGATAAACAAGCAACCTTGATTCCTGATGACCTATTTGAT
GCCACAAAAACGACCCTCATCACTTCCATCAACTTCAGCAAAAATCAGCTGTGCGAGATTCCACAAAGGA
TTGTTGAGCTGAAGGAAATGGTGTTGGATATCAACCTCAGTTTTAACAAGCTTTCATTTATATCCCACGA
GTTATGCTTGCTTCAGAAATTGACATTTTTAGATTTAAGGAATAATTTTTTAAGTTCTTTGCCTGAAGAG
ATGTCATCACTGACAAAACTGCAAACGATCAATCTTTCCTTTAACAGGTTCAAAGTGTTTCCTGAAGTTC
TGTATCGAATCTCCACACTGGAAGCGGTTCTGATCAGTAACAATCAGGTTGGCTCTGTGGACCCTCAGAA
GATGAAGCTGATGGAAAATCTGAATACTTTAGACCTTCAAAACAATGACCTTTTGCAGATTCCCCCAGAG
CTTGGGAACTGTGTGCAGCTACGGACACTACTGCTAGATGGAAATCCATTCCGAGTTCCTCGAGCGGCCA
TATTAATGAAAGGCACAGCTGCTGTGCTGGAGTATTTGAGAGATCGAATCCCTGCCTGA

Translation (602 aa):
MSRQLRAPRFDPRAGFHAEGKDRGPSVPQGLLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNL
SFSSTERWWDQTDLTKLIISSNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKL
KILPEEITSLKNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK
NLPAEISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELHLAENQIEKL
GAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNLHLKFLALEGNPLRTIR
REIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEARVNIHAIATLKLLDYSDKQATLIPDDLFD
ATKTTLITSINFSKNQLCEIPQRIVELKEMVLDINLSFNKLSFISHELCLLQKLTFLDLRNNFLSSLPEE
MSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKLMENLNTLDLQNNDLLQIPPE
LGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH