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Report for CCDS17600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17600.1 Public Mus musculus 3 Zfp687 23 108 98 CCDS HistoryNCBI Gene:78266Re-query CCDS DB by CCDS ID:17600.1Re-query CCDS DB by GeneID:78266See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019482.7 ENSMUSP00000019482.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019482.7Link to Ensembl Protein Viewer:ENSMUSP00000019482.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000019482Re-query CCDS DB by Protein ID:ENSMUSP00000019482
Original member Current member NCBI NM_001357863.1 NP_001344792.1 Accepted alive Link to Nucleotide Sequence:NM_001357863.1Link to Protein Sequence:NP_001344792.1Re-query CCDS DB by Nucleotide ID:NM_001357863Re-query CCDS DB by Protein ID:NP_001344792Link to BLAST:NP_001344792.1
Original member Current member NCBI NM_030074.3 NP_084350.1 Accepted alive Link to Nucleotide Sequence:NM_030074.3Link to Protein Sequence:NP_084350.1Re-query CCDS DB by Nucleotide ID:NM_030074Re-query CCDS DB by Protein ID:NP_084350Link to BLAST:NP_084350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344792.1 1237 Q9D2D7-1 1237 100% 0 0
NP_084350.1 1237 Q9D2D7-1 1237 100% 0 0

Chromosomal Locations for CCDS 17600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95007475 95007966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95008072 95008213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95008380 95008492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95008585 95008917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95009076 95009238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95009343 95009519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95010044 95010222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95010345 95012459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3714 nt):
ATGGGGGACATGAAGACCCCTGATTTCGATGACCTCCTTGCTGCTTTTGACATCCCTGACATTGATGCAA
ATGAAGCCATTCACTCTGGGCCAGAAGAAAATGAGGGACCAGGAGGCCAAGGGAAGCCAGAACCCAGTGT
AGGAGGAGATTCTAAAGACAGAGAAGAAGCAGCAGCCGCTGAGAATGACCCTGAGAGTCCAGCTGAGGCC
TCTGATCATGGCCTTCCACAACCACCGGATACTTCTACAGTCAGCGTCATTGTCAAGAACACAGTGTGTC
CAGAGCAGTCCGAGAGCCTGACTGGGGATTCAGGAGAGGAAGAGACCAAGGCTGGGGGTATAACTAAGGA
AGGACCTGTGGGGTCTTGTCTGATGCAGAATGGGTTTGGGGGTCCTGAGCCCTCTCTCTCAGAAAACCCC
CATTCTTCAGCACATGCCAGTGGGAATGCCTGGAAAGACAAAGCTGTGGAAGGCAAAACATGCTTGGACC
TCTTTGCTCATTTTGGGTCTGAACCAGGAGACCACCCAGATCCCCTACCTCCAGAACCTTCCCAACCTCG
GGGTGGTGACATGGCCCCACCTCCTTTCTCCACTCCTTTTGAACTGGCCCCAGAAAATGGCTCAACCCTG
CTTCCTCCTGCTTCACTCTTGCCTCAAGGGGCCTTGAAACAGGAAAGCTGCAGCCCTCACCATTCCCAGG
GCCTAACCCAGAGAGGCCCAGGCTCCAGCCCCGAGACAGCAGGCATCCCTGCCAGTGTCTCTCCCCCGCA
GGTGGCTGGGGTGTCCTTCAAGCAGTCTCCAGGACACCAGAGTCCTCCTGCTTCCCCTGTCAAGGCACCC
AGCTGTAAACCCCTGAAGGAAGAAGATGAGGGAACAGTGGACAAGTCTCCCCCAAGAAGTCCCCAGAGTC
CCTCTAGTGGAGCTGAGGCTGCAGATGAGGACAGCAATGATTCCCCTACCTCCTCCAGCTCTTCTAGGCC
CCTCAAGGTGCGGATCAAGACTATTAAAACATCCTGTGGGAATATCACAAGAACTGTAACCCGGGTCCCC
TCAGAACCCGATCCTCCTGCCCCTTTGGCCGAGGGGGCTTTCCTGGCCGAGACTAGCTTCCTGAAACTGT
CCCCTGTAACTCCAACCCCCGAAGGTCCAAAGGTGGTGAGTGTCCAATTGGGTGATGGCACGAGGCTGAA
AGGTACAGTGCTGCCTGTGGCCACCATCCAGAATGCCAGCACTGCCATGCTCATGGCAGCCAGTGTAGCC
CGCAAAGCTGTGGTTCTACCAGGGGGGAATGCCACCAGCCCCAAAACTATGACTAAGAGTGTGTTAGGTC
TGGTGCCCCAAACTCTGCCCAAGGCTGAGGTACGGACAGGGTTTAGCCTTGGGGGGCAGAAGGTAAATGG
TGCCTCAGTGGTGATGGTACAGCCTTCCAAGTCTGCTACTGGGCCAGGCACAGCAGGTGGCTCGGTGATC
TCCCGAACCCAGTCCAGTCTGGTAGAGGCCTTCAACAAGATCCTCAACAGCAAGAACCTGCTGCCTGCTT
ATAGACCAAACCTGAGTCCGCCAGCTGAGGCTGGTCTGGCCCTGCCTCCAACAGGCTACCGCTGCCTTGA
GTGTGGAGATGCCTTCTCTCTGGAGAAGAGCCTGGCACGGCACTATGATCGAAGGAGCATGCGTATAGAG
GTCACCTGTAACCACTGTGCCCGTCGCCTGGTTTTCTTCAACAAGTGTAGCCTGCTTCTGCATGCCCGTG
AGCACAAGGACAAGGGGCTTGTCATGCAGTGCTCACATTTGGTCATGAGGCCTGTAGCCCTTGACCAGAT
GGTGGGGCAGCCAGACATCACACCCTTGCTGCCTGTGGCTGTCCCACCTGTTCCTGGACCTTTGGCCTTG
CCTGTTTTGGGCAAGGGGGAGGGGGCTGTCACTTCCTCTACCATCACTACAGTTGCCACTGAAGCTCCTG
TGCTGCCACTCCCAACAGAGCCCCCTGCTCCCCCTACTGCCTCTGTTTACACGTGCTTTCGCTGTCTGGA
GTGCAAAGAGCAGTGCCGGGACAAGGCTGGCATGGCAGCCCATTTCCAGCAGCTGGGCCCTCCTGCACTC
GGGTCTACCAGCAATGTGTGTCCGTCCTGCCCCATGATGCTCCCCAATCGCTGCAGCTTCAGTGCCCACC
AGCGCACACATAAGAATCGAGCCCCCCATGTGTGTCCCGAGTGTGGGGGTAACTTCCTACAAGCTAATTT
TCAGACCCATCTTCGAGAGGCCTGTCTGCATTTCTCTCGCCGTGTAGGATACAGGTGCCCTAGCTGTGCA
GTGGTGTTTGGGGGTGTGAACTCCATCAAGTCCCACATCCAGGCATCACACTGCGAAGTTTTCCACAAGT
GCCCCATCTGCCCCATGGCCTTCAAGTCTGCACCCAGCGCCCATGCCCACCTCTACTCCCAGCATCCAAG
CTTCCTCACCCAGCAAGCCAAGCTGATCTATAAGTGTGCCATGTGTGATACGGTCTTCACTCACAAACCC
CTCCTCTCCTCACACTTTGACCAGCACTTACTGCCCCAGCGTGTCAGTGTCTTTAAGTGCCCGTCTTGTC
CTCTGCTTTTTGCCCAAAAAAGAACCATGCTGGAGCATCTCAAGAACACTCACCAGTCTGGACGTGTGGG
GGAAGAGGCAGTTGGGAAAGGGGCTGGAGGTGCCCTTTTGACCCCCAAGACTGAGCCTGAGGAGCTGGCT
GTGTCTCAGGCAGAGGCAGCCCCTGCTACTGAGGAGTCTTCCTCATCTTCTGAAGAGGAGCTGCCTAGCT
CCCCTGAGCCACCCCGACCAACCAAAAGAGCCCGACGAGGAGAACTGGGAAACAAAGGCATCAAAGGTGG
GGGTGGGGGGCCTGGGGGCTGGACTTGTGGCCTTTGTCACTCCTGGTGTCCTGAGCGTGACGAGTATGTG
ACTCACATGAAGAAGGAACATGGTAAGTCAGTGAAAAAGTTCCCCTGTCGCCTGTGTGAGCGCTCCTTTT
GCTCTGCCCCAAGCCTGAGGCGCCATGTCAGGGTCAACCATGAGGGAATCAAGCGAGTTTACCCATGCAG
GTATTGTACAGAGGGAAAGCGCACCTTCAGTAGTCGCCTGATCCTGGAGAAGCATGTTCAGGTCCGGCAC
GGCTTGCCTCTTGGGACCCAGTCTTCTGGCCGAGGAGGCTCCCTGGCTCGAGGCTCTGGTGGCAGAGCCC
AGGGGCCAGGACGGAAACGCCGCCAGTCTTCTGACTCATGCAGTGAGGAGCCTGACAGTACAACACCACC
AGCCAAGTCCCTGAGGGGTGGCCCTGGGTCAGGAGGCCACGGTCCTCTGCGCTATAGAAGCAGTGGCTCA
GCAGAACAGAGCCTTGTGGGGTTGAGGGTGGATGGTGGCACTCAGCAGTGCCTTGACTGTGGCTTGTGCT
TTGCTTCCCCTGGTTCCCTGAGCCGCCACCGGTTCATTAGCCACAAGAAGAGACGGGCCGGGGGTAAGGC
CAGTGTCCTGGGGCTGGGGGATGGGGAAGAAGCAGCTCCTCCTTTACGCTCTGACCCAGAGGGTGGAGAC
TCACCTTTGCCTGCTCCTGGAGACCCTCTGACTTGTAAGGTCTGTGGCAAGAGCTGTGACAGCCCTCTAA
ACCTCAAGACCCATTTCCGCACGCATGGCATGGCATTCATCAGGGCCCGGCAGGGAGGCAGTGGGGACAA
CTAG

Translation (1237 aa):
MGDMKTPDFDDLLAAFDIPDIDANEAIHSGPEENEGPGGQGKPEPSVGGDSKDREEAAAAENDPESPAEA
SDHGLPQPPDTSTVSVIVKNTVCPEQSESLTGDSGEEETKAGGITKEGPVGSCLMQNGFGGPEPSLSENP
HSSAHASGNAWKDKAVEGKTCLDLFAHFGSEPGDHPDPLPPEPSQPRGGDMAPPPFSTPFELAPENGSTL
LPPASLLPQGALKQESCSPHHSQGLTQRGPGSSPETAGIPASVSPPQVAGVSFKQSPGHQSPPASPVKAP
SCKPLKEEDEGTVDKSPPRSPQSPSSGAEAADEDSNDSPTSSSSSRPLKVRIKTIKTSCGNITRTVTRVP
SEPDPPAPLAEGAFLAETSFLKLSPVTPTPEGPKVVSVQLGDGTRLKGTVLPVATIQNASTAMLMAASVA
RKAVVLPGGNATSPKTMTKSVLGLVPQTLPKAEVRTGFSLGGQKVNGASVVMVQPSKSATGPGTAGGSVI
SRTQSSLVEAFNKILNSKNLLPAYRPNLSPPAEAGLALPPTGYRCLECGDAFSLEKSLARHYDRRSMRIE
VTCNHCARRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPVALDQMVGQPDITPLLPVAVPPVPGPLAL
PVLGKGEGAVTSSTITTVATEAPVLPLPTEPPAPPTASVYTCFRCLECKEQCRDKAGMAAHFQQLGPPAL
GSTSNVCPSCPMMLPNRCSFSAHQRTHKNRAPHVCPECGGNFLQANFQTHLREACLHFSRRVGYRCPSCA
VVFGGVNSIKSHIQASHCEVFHKCPICPMAFKSAPSAHAHLYSQHPSFLTQQAKLIYKCAMCDTVFTHKP
LLSSHFDQHLLPQRVSVFKCPSCPLLFAQKRTMLEHLKNTHQSGRVGEEAVGKGAGGALLTPKTEPEELA
VSQAEAAPATEESSSSSEEELPSSPEPPRPTKRARRGELGNKGIKGGGGGPGGWTCGLCHSWCPERDEYV
THMKKEHGKSVKKFPCRLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHVQVRH
GLPLGTQSSGRGGSLARGSGGRAQGPGRKRRQSSDSCSEEPDSTTPPAKSLRGGPGSGGHGPLRYRSSGS
AEQSLVGLRVDGGTQQCLDCGLCFASPGSLSRHRFISHKKRRAGGKASVLGLGDGEEAAPPLRSDPEGGD
SPLPAPGDPLTCKVCGKSCDSPLNLKTHFRTHGMAFIRARQGGSGDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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