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Report for CCDS17456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17456.1 Public Mus musculus 3 Prcc 23 108 98 CCDS HistoryNCBI Gene:94315Re-query CCDS DB by CCDS ID:17456.1Re-query CCDS DB by GeneID:94315See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005015.9 ENSMUSP00000005015.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005015.9Link to Ensembl Protein Viewer:ENSMUSP00000005015.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005015Re-query CCDS DB by Protein ID:ENSMUSP00000005015
Original member Current member NCBI NM_033573.2 NP_291051.1 Accepted alive Link to Nucleotide Sequence:NM_033573.2Link to Protein Sequence:NP_291051.1Re-query CCDS DB by Nucleotide ID:NM_033573Re-query CCDS DB by Protein ID:NP_291051Link to BLAST:NP_291051.1

Chromosomal Locations for CCDS 17456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87859260 87859346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87860146 87860211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87862131 87862274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87867315 87867410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87869583 87870149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87872210 87872257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87884875 87885342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGTCTCTGGTTGCTTATGCCAGCAGCGACGATAGTGAGCCGGATGAGCCGGAGCCGGAGCCGGAGCCGG
AGGAAGAGGATGTGGCGGCTCCTATGCCAGGGCCCACTTTAGGAGGCCTGTTCGCTTCTCTTCCTGCACC
CAAAGGCCCGGCCTTGCTGCCCCCGCCCCCCCAGATGCTGGCCCCAGCCTTCCCCCCGCCGCTCCTGCTG
CCCCCGCCCACCGGAGACCCCAGACTGCAGCCGCCTCCGCCGCTGCCCTTTGGCCTGGGCGGCTTCCCGC
CACCTGCAGGAGTGAGCCCTGCTGAAGCTGCGGGAGTTGGAGAGGGGCTGGGGCTGCCATCGCCTCAAGG
CCCTGGGCTCAGTCTGCCCCCAGCTGTGGGCGGTGTCGGACCCCCCTTGGGCCTTCCCAAGCCAAAGAAG
AGAACCGAACCGGTTAGGATAGCGGCGCCGGAGCTGCAGAAGGGCGATTCAGATTCTGAGGAAGATGAAC
CTGCGAAGAAGAAAGTTGTCCTGCAGGGATCCGGCGAGGGGACTGGTTTGTCTGCCTTGCTCCCCCAACC
TAAAAACCTGACTGTGAAAGAGACTAACAGGTTGCTCCTGCCCCATGCCTTCTCCCGGAAACCTTCAGAT
ATCTCCTCAGATGCTAAGCCCTCTAGATTGGCTTCTAAGACCAAGCCCGCCTCACTTGCTCCTGTTTTGG
GTACCACAACCACCACTCCATCACCCTCTGCCATCAAGGCTGCTGCCAAGAGTGCTGCCCTGCAGGTGAC
CAAGCAGATAACACAGGAGGATGACGACAGTGACGAGGAAGTTGCTCCTGAGAACTTTTTCTCCCTCCCT
GACAAGGCTGAGCCACCTGGAGTTGAGCCATACCCTTACCCTGTCCCCACTGTCCCTGAAGAGCTGCCTC
CAGGCACAGAACCAGAACCAGCTTTCCAGGACGATGCAGCCAATGCCCCCCTTGAGTTTAAGATGGCGGC
AGGGTCAAGTGGAGCTCCCTGGATGCCGAAGCCTGGGGATGACTACAGCTACAATCAGTTTTCCACATAT
GGCGATGCCAATGCTGCTGGTGCTTATTATCAGGATTACTACAGTGGTGGCTACTATCCTGCACCGGACC
CGGCTCTGGTCCCTCCCCAGGAAATTGCCCCTGATGCCTCCTTCATTGATGATGAAGCATTTAAGCGGCT
ACAGGGCAAGAGGAACCGAGGGAGAGAGGAAATCAACTTTGTGGAGATCAAAGGTGATGACCAACTCAGT
GGGGCTCAGCAGTGGATGACCAAGTCACTGACAGAAGAGAAAACCATGAAGTCCTTCAGCAAAAAGAAAG
GTGAACAGCCAACTGGCCAGCAGCGGAGGAAACACCAGATCACATATCTGATTCATCAGGCTAAGGAGCG
GGAGCTGGAGCTGAAGAACACCTGGTCAGAAAACAAGCTCAGTCGCCGGCAGACCCAAGCCAAATATGGA
TTCTAG

Translation (491 aa):
MSLVAYASSDDSEPDEPEPEPEPEEEDVAAPMPGPTLGGLFASLPAPKGPALLPPPPQMLAPAFPPPLLL
PPPTGDPRLQPPPPLPFGLGGFPPPAGVSPAEAAGVGEGLGLPSPQGPGLSLPPAVGGVGPPLGLPKPKK
RTEPVRIAAPELQKGDSDSEEDEPAKKKVVLQGSGEGTGLSALLPQPKNLTVKETNRLLLPHAFSRKPSD
ISSDAKPSRLASKTKPASLAPVLGTTTTTPSPSAIKAAAKSAALQVTKQITQEDDDSDEEVAPENFFSLP
DKAEPPGVEPYPYPVPTVPEELPPGTEPEPAFQDDAANAPLEFKMAAGSSGAPWMPKPGDDYSYNQFSTY
GDANAAGAYYQDYYSGGYYPAPDPALVPPQEIAPDASFIDDEAFKRLQGKRNRGREEINFVEIKGDDQLS
GAQQWMTKSLTEEKTMKSFSKKKGEQPTGQQRRKHQITYLIHQAKERELELKNTWSENKLSRRQTQAKYG
F


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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