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Report for CCDS17335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17335.1 Public Mus musculus 3 Slc7a11 23 108 98 CCDS HistoryNCBI Gene:26570Re-query CCDS DB by CCDS ID:17335.1Re-query CCDS DB by GeneID:26570See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029297.5 ENSMUSP00000029297.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029297.5Link to Ensembl Protein Viewer:ENSMUSP00000029297.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029297Re-query CCDS DB by Protein ID:ENSMUSP00000029297
Original member Current member NCBI NM_011990.2 NP_036120.1 Accepted alive Link to Nucleotide Sequence:NM_011990.2Link to Protein Sequence:NP_036120.1Re-query CCDS DB by Nucleotide ID:NM_011990Re-query CCDS DB by Protein ID:NP_036120Link to BLAST:NP_036120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036120.1 502 Q9WTR6 502 100% 0 0

Chromosomal Locations for CCDS 17335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50372302 50372366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50377564 50377741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50379035 50379184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50380972 50381068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50381875 50381978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50384044 50384167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50417988 50418032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50424042 50424141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50427651 50427776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50435349 50435464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50438789 50438915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50442985 50443261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGTCAGAAAGCCAGTTGTGGCCACCATCTCCAAAGGAGGTTACCTGCAGGGCAATATGAGCGGGAGGC
TGCCCTCCATGGGGGACCAAGAGCCACCTGGGCAGGAGAAGGTAGTTCTGAAAAAGAAGATCACTTTGCT
GAGGGGGGTCTCCATCATCATCGGCACCGTCATCGGATCAGGCATCTTCATCTCCCCCAAGGGCATACTC
CAGAACACGGGCAGCGTGGGCATGTCCCTGGTTTTCTGGTCTGCCTGTGGAGTACTGTCACTTTTTGGAG
CCCTGTCCTATGCAGAATTAGGTACAAGCATAAAGAAATCTGGTGGTCATTACACATACATTCTGGAGGT
CTTTGGTCCTTTGCTGGCTTTTGTTCGAGTCTGGGTGGAACTGCTCGTAATACGCCCTGGAGCTACTGCT
GTGATATCCCTGGCATTTGGACGCTACATCCTGGAACCATTTTTTATTCAATGTGAAATTCCTGAACTTG
CAATCAAGCTCGTGACAGCTGTGGGCATCACTGTGGTGATGGTCCTAAATAGCACGAGTGTCAGCTGGAG
TGCCCGGATCCAGATTTTCCTAACCTTTTGCAAGCTCACAGCAATTCTGATAATTATAGTCCCTGGAGTT
ATACAGCTAATTAAAGGGCAAACACATCACTTTAAAGATGCATTTTCAGGAAGAGACACAAGTCTAATGG
GGTTGCCCTTGGCTTTTTATTATGGGATGTATGCATATGCTGGCTGGTTTTACCTCAACTTTATTACTGA
AGAAGTAGACAACCCTGAAAAAACCATCCCCCTTGCAATCTGCATCTCCATGGCTATCATCACAGTGGGC
TACGTACTGACAAACGTGGCCTATTTTACCACCATCAGTGCGGAGGAGCTGCTGCAGTCCAGCGCCGTGG
CGGTGACCTTCTCTGAGCGGCTGCTGGGAAAATTCTCATTAGCAGTCCCGATCTTTGTTGCCCTCTCCTG
CTTCGGCTCCATGAACGGTGGTGTGTTCGCTGTCTCCAGGTTATTCTACGTCGCATCTCGAGAAGGGCAC
CTTCCGGAAATCCTCTCTATGATTCATGTCCACAAGCACACTCCTCTGCCAGCTGTTATTGTTTTGCATC
CTCTGACGATGGTGATGCTCTTCTCCGGAGACCTCTATAGTCTTCTAAATTTCCTCAGTTTTGCCAGGTG
GCTTTTTATGGGGCTGGCAGTCGCAGGACTGATTTATCTTCGATACAAACGCCCAGATATGCATCGTCCT
TTCAAGGTGCCTCTCTTCATCCCGGCACTATTTTCCTTCACCTGCCTCTTCATGGTTGTCCTCTCTCTTT
ACTCGGACCCATTCAGCACCGGGGTCGGTTTTCTTATCACCTTGACTGGGGTCCCTGCATATTATCTCTT
CATTGTATGGGACAAGAAACCCAAGTGGTTCAGACGATTATCAGACAGAATAACCAGAACATTACAGATT
ATACTAGAAGTTGTACCAGAAGACTCTAAAGAATTATGA

Translation (502 aa):
MVRKPVVATISKGGYLQGNMSGRLPSMGDQEPPGQEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGIL
QNTGSVGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLVIRPGATA
VISLAFGRYILEPFFIQCEIPELAIKLVTAVGITVVMVLNSTSVSWSARIQIFLTFCKLTAILIIIVPGV
IQLIKGQTHHFKDAFSGRDTSLMGLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVG
YVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGH
LPEILSMIHVHKHTPLPAVIVLHPLTMVMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRP
FKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFRRLSDRITRTLQI
ILEVVPEDSKEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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