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Report for CCDS17170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17170.1 Public Mus musculus 2 Osbpl2 23 108 98 CCDS HistoryNCBI Gene:228983Re-query CCDS DB by CCDS ID:17170.1Re-query CCDS DB by GeneID:228983See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040668.8 ENSMUSP00000046538.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040668.8Link to Ensembl Protein Viewer:ENSMUSP00000046538.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040668Re-query CCDS DB by Protein ID:ENSMUSP00000046538
Original member Current member NCBI NM_144500.4 NP_653083.2 Accepted alive Link to Nucleotide Sequence:NM_144500.4Link to Protein Sequence:NP_653083.2Re-query CCDS DB by Nucleotide ID:NM_144500Re-query CCDS DB by Protein ID:NP_653083Link to BLAST:NP_653083.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653083.2 484 Q8BX94 484 100% 0 0

Chromosomal Locations for CCDS 17170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180137076 180137112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180138213 180138357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180141105 180141180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180144832 180144966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180145089 180145186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180148426 180148608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180150179 180150286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180151016 180151105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180153199 180153322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180155267 180155407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180157829 180157952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180159029 180159119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180161489 180161591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGAACGGGGAGGAAGAATTCTTTGATGCCGTCACAGGCTTTGATTCTGATAATTCTTCTATAGGGGAAT
TTTCAGAGGCAAATAAAATTAGTGGGATGATTGACTTGGATACCAGCAAAAGTACTAGGAGTGGGAAAAA
TGGGGAGAAACCACAACAAGAGAATGGAATTCAAAAGCACAGGACAGCCCTTCCTGCTCCCATGTTCACC
AGAAGCGACTTCAGTGTGTGGAGTATCCTGAAGAAATGCATTGGCTTGGAACTCTCCAAGATCACAATGC
CAATTGCCTTCAATGAGCCACTGAGCTTCCTGCAGCGGATCACAGAGTACATGGAGCATGTGTACCTCAT
TCACAAAGCCTCAAGTCAGTCCCAGCCGCTGGAGAGAATGCAGTCTGTCGCTGCCTTTGCGGTCTCAGCT
GTGGCTTCCCAGTGGGAGAGAACTGGCAAACCCTTTAACCCACTCTTGGGAGAGACATATGAGTTGATCA
GGGAAGACTTAGGGTTCAGATTTATATCTGAGCAGGTCAGTCACCACCCTCCTATTAGCGCATTTTATTC
AGAAGGTCTCAATCAAGACTTCAGGTTCCACGGTTCCATCTACCCAAAGCTGAAGTTCTGGGGCAAGAGT
GTGGAGGCGGAGCCCCGGGGGACCATCACACTGGAGCTGCTCAAACATAATGAAGCCTATACCTGGACCA
ACCCTACCTGCTGTGTACACAATGTCATCCTTGGGCAGCTATGGATAGAGCAGTATGGGATAGTGGAGAT
TGTAAATCACAGAACTGGAGATAAGTGTATACTTCACTTCAAGCCTTGTGGATTGTTTGGGAAGGAACTT
CACAGAGTAGAAGGGTACATTCAAGACAAAAACAGGAAGAAGCTCTTTATCATGTATGGCAAGTGGACAG
AGTGCTTGTGGGGAATAGATCCTGCTTCATACGAGTCCTTTAAGAAGCAAGAGAAGAGAGGTGACCAGGC
CAGGAAGGCCAAGATGGATGATGGCCCCGAGAAAGCTAACAGTGATGTGCCTGGTGATGTGGCAGACGAC
GTTCCTGTGGCTCAGGAGACGGTGCAAGTCATCCCCGGCAGCAAGCTGCTCTGGAGGATCAACAGCCGGC
CCCCCAACTCTGCTCAGATGTACAACTTTACCAGCTTCACTGTGAGTCTCAATGAGTTGGAGTCAGGCAT
GGAGAAGACTCTGCCACCCACAGACTGCCGCCTCCGTCCTGACATACGAGGCATGGAGAACGGAAACATG
GATCTGGCCAGCCAGGAGAAGGAGCGGCTAGAGGAAAAGCAGAGAGAGGCCAGAAAAGAGCGTGCCAAAG
AGGACGCAGAGTGGCGGACCAGGTGGTTCTCTCCAGGCAATAACCCCTACACAGGAGCTCCTGACTGGCT
GTACGCCGGCCATTACTTTGAGCGTAACTTCTCAGACTGCCCAGACATATACTAA

Translation (484 aa):
MNGEEEFFDAVTGFDSDNSSIGEFSEANKISGMIDLDTSKSTRSGKNGEKPQQENGIQKHRTALPAPMFT
RSDFSVWSILKKCIGLELSKITMPIAFNEPLSFLQRITEYMEHVYLIHKASSQSQPLERMQSVAAFAVSA
VASQWERTGKPFNPLLGETYELIREDLGFRFISEQVSHHPPISAFYSEGLNQDFRFHGSIYPKLKFWGKS
VEAEPRGTITLELLKHNEAYTWTNPTCCVHNVILGQLWIEQYGIVEIVNHRTGDKCILHFKPCGLFGKEL
HRVEGYIQDKNRKKLFIMYGKWTECLWGIDPASYESFKKQEKRGDQARKAKMDDGPEKANSDVPGDVADD
VPVAQETVQVIPGSKLLWRINSRPPNSAQMYNFTSFTVSLNELESGMEKTLPPTDCRLRPDIRGMENGNM
DLASQEKERLEEKQREARKERAKEDAEWRTRWFSPGNNPYTGAPDWLYAGHYFERNFSDCPDIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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