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Report for CCDS17133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17133.1 Public Mus musculus 2 Gcnt7 23 108 98 CCDS HistoryNCBI Gene:654821Re-query CCDS DB by CCDS ID:17133.1Re-query CCDS DB by GeneID:654821See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099060.1 ENSMUSP00000096659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099060.1Link to Ensembl Protein Viewer:ENSMUSP00000096659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099060Re-query CCDS DB by Protein ID:ENSMUSP00000096659
Original member Current member NCBI NM_001039560.3 NP_001034649.1 Accepted alive Link to Nucleotide Sequence:NM_001039560.3Link to Protein Sequence:NP_001034649.1Re-query CCDS DB by Nucleotide ID:NM_001039560Re-query CCDS DB by Protein ID:NP_001034649Link to BLAST:NP_001034649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034649.1 433 Q3V3K7-1 433 100% 0 0

Chromosomal Locations for CCDS 17133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172451064 172451287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172452942 172453037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172453921 172454902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGAGCCAGCTCCGGACCACAAAGGCTGGGCTGGTGGCATGTGGCATGATTTGCGCCTTCATCTTTCTTT
ACTTGAGAAACCCAGGTCCTGAGGAGGCTGAGGCTGAGGCTGAGGCTGAGCCCACCAACCCAGCTGTGGT
GGAATGTGGCTTCTATCCAGATGAACTGTGCTCGGCTTTATTTGACGGGAAAAAGGCAGCCCCCCAAATC
GCTCAATTCTGCAAACCCCCTCAGAACTCTGAAGTTCCTGCTCGCTTGCGCACACCTGGAAACTGCTCCA
GGCTGGCTCGGGGGCTGCACTTCATAACCAGACCCCTGTCTGCAGAAGAGGGGAACTTCTCCTTGGCCTA
TGTTATACATGCTCCGAGGGAGCTGGTCATGTTTGTGCGGCTTCTCAGAGCGATTTATGCACCTCAGAAT
GTCTACTGTATCCACAGTGATGAAAATGCCCCAAAGAAGTTTAAGAGTGCCATGCAAACCTTCGTGGACT
GTTTTGGAAACATCTTTCTTTCATCAAAGACACAGAAGGTGGCTCATGACAACCTCAGGAGGCTGCAGGC
AGAGATTGACTGCATGAGGGACCTGGTCCACTCCCCATTTCAATGGCACTATGTCATGAATCTCTGTGGA
CAGGAATTCCCTATCAAAACCAACAAAGAAATCATCTATGACATCAGAACCAGGTGGAAGGGTAAAAACA
TCACGCCTGGGGTGACCCCACCCGCAAACTCCAAACCCAAGACAGGCCAAGGCCCTCCAAAGCCCAGTCC
CGATGAAAACAGCTACACAGCTCCAAATACAATTTTCAAACAAAGCCCACCCCACAATCTAACAATTTCC
TCTGGAAGTGCTCACTATGCACTTACGAGGAAGTTTGTAGAGTTCGTCCTAACTGATCCCCGTGCAAAAG
ACATGCTGCAGTGGTCCAAAGACATCCAAAGCCCGGAGAAGCACTACTGGGTGACCCTGAACCGACTGAA
AGACGCTCCAGGTGCCACACCAGATGCTGGATGGGAAGGACACATTCGGGCCACAAAGTGGAGAACAGAG
GCAGGAGATGGTCGCAAGGGGTGCACAGACCACGATGCCCAAGACACTTGTGTGTATGGCCTGGGAGACC
TGCCTGGGCTCATCCGGCTGCCAGCTTTCTTTGCCACGCTGGAGCCCTCCTCAGACCCGCTGGTGGGAGT
ATGCCTAGAGAGGCGGCACCGACTCAGAGCCCTACAGCAGGCCGAGGTCCCTCCAGAGCCACACTGGCAG
TTTCCCCAGCAAAGCCACTTCAACAGTCAACCTCACCATTAA

Translation (433 aa):
MSQLRTTKAGLVACGMICAFIFLYLRNPGPEEAEAEAEAEPTNPAVVECGFYPDELCSALFDGKKAAPQI
AQFCKPPQNSEVPARLRTPGNCSRLARGLHFITRPLSAEEGNFSLAYVIHAPRELVMFVRLLRAIYAPQN
VYCIHSDENAPKKFKSAMQTFVDCFGNIFLSSKTQKVAHDNLRRLQAEIDCMRDLVHSPFQWHYVMNLCG
QEFPIKTNKEIIYDIRTRWKGKNITPGVTPPANSKPKTGQGPPKPSPDENSYTAPNTIFKQSPPHNLTIS
SGSAHYALTRKFVEFVLTDPRAKDMLQWSKDIQSPEKHYWVTLNRLKDAPGATPDAGWEGHIRATKWRTE
AGDGRKGCTDHDAQDTCVYGLGDLPGLIRLPAFFATLEPSSDPLVGVCLERRHRLRALQQAEVPPEPHWQ
FPQQSHFNSQPHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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