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Report for CCDS16912.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16912.2 Public Mus musculus 2 Commd7 23 108 98 CCDS HistoryNCBI Gene:99311Re-query CCDS DB by CCDS ID:16912.2Re-query CCDS DB by GeneID:99311See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16912.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16912.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071852.9 ENSMUSP00000071752.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071852.9Link to Ensembl Protein Viewer:ENSMUSP00000071752.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071852Re-query CCDS DB by Protein ID:ENSMUSP00000071752
Original member Current member NCBI NM_133850.2 NP_598611.2 Accepted alive Link to Nucleotide Sequence:NM_133850.2Link to Protein Sequence:NP_598611.2Re-query CCDS DB by Nucleotide ID:NM_133850Re-query CCDS DB by Protein ID:NP_598611Link to BLAST:NP_598611.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598611.2 200 Q8BG94 200 100% 0 0

Chromosomal Locations for CCDS 16912.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153619436 153619512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153620446 153620494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153621770 153621819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622044 153622134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622651 153622688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622772 153622828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153628465 153628567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153629193 153629246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153632594 153632677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGCCGCCTGCACTGCACGCAGGACCCGGTGCCCGAGGCCGTGCGCGGAGACATGCAGCAGCTGAACC
AGCTGGGCGCTCAGCAGTTCTCCGACCTGACAGAAGTGCTTTTCCATTTCCTAACTGAGCCCAAAGAGGT
GGAGCGATTTCTGGCTCAGCTCTCTGAATTTGCCACCAGCAATCAGATCAGTCTTGGCCCCCTCAAAAGC
ATCATGAAAAGCCTCCTACTGGTTCCAAATGGTGCACTGAAGAAAGGCCTCACTGCCGAGCAGGTGCGGA
CTGATCTCCAGACGCTAGGTCTTAGCGAGGAGAAAGCCACTTACTTTTCTGAAAAGTGGAAGCAGAACGC
CTCGACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTGGAGG
TTTGGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAGTGGGAAGCATATTTTTACAGTTAAAGTTGGTGG
TTAAGAAAGGAAAACAAACTGAAAATTTGTATATGGAACTAACCTTGCCCCAGTTCTACAGCTTCCTGCA
CGAGATGGAGAGAGTCCGAGCGAGCATGGAGTGCCTCAGCTGA

Translation (200 aa):
MGRLHCTQDPVPEAVRGDMQQLNQLGAQQFSDLTEVLFHFLTEPKEVERFLAQLSEFATSNQISLGPLKS
IMKSLLLVPNGALKKGLTAEQVRTDLQTLGLSEEKATYFSEKWKQNASTLAQWAMGQTLMVNQLIDMEWR
FGVTSGSSELEKVGSIFLQLKLVVKKGKQTENLYMELTLPQFYSFLHEMERVRASMECLS


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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