NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1689.1 Public Homo sapiens 2 VSNL1 24 110 108 CCDS HistoryNCBI Gene:7447Re-query CCDS DB by CCDS ID:1689.1Re-query CCDS DB by GeneID:7447See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295156.9 ENSP00000295156.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295156.9Link to Ensembl Protein Viewer:ENSP00000295156.4Re-query CCDS DB by Nucleotide ID:ENST00000295156Re-query CCDS DB by Protein ID:ENSP00000295156
Original member Current member EBI ENST00000404666.6 ENSP00000384014.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404666.6Link to Ensembl Protein Viewer:ENSP00000384014.1Re-query CCDS DB by Nucleotide ID:ENST00000404666Re-query CCDS DB by Protein ID:ENSP00000384014
Original member Current member EBI ENST00000406397.1 ENSP00000384719.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406397.1Link to Ensembl Protein Viewer:ENSP00000384719.1Re-query CCDS DB by Nucleotide ID:ENST00000406397Re-query CCDS DB by Protein ID:ENSP00000384719
Original member Current member NCBI NM_001366803.2 NP_001353732.1 Accepted alive Link to Nucleotide Sequence:NM_001366803.2Link to Protein Sequence:NP_001353732.1Re-query CCDS DB by Nucleotide ID:NM_001366803Re-query CCDS DB by Protein ID:NP_001353732Link to BLAST:NP_001353732.1
Original member Current member NCBI NM_001366806.2 NP_001353735.1 Accepted alive Link to Nucleotide Sequence:NM_001366806.2Link to Protein Sequence:NP_001353735.1Re-query CCDS DB by Nucleotide ID:NM_001366806Re-query CCDS DB by Protein ID:NP_001353735Link to BLAST:NP_001353735.1
Original member Current member NCBI NM_003385.5 NP_003376.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003385.5Link to Protein Sequence:NP_003376.2Re-query CCDS DB by Nucleotide ID:NM_003385Re-query CCDS DB by Protein ID:NP_003376Link to BLAST:NP_003376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353732.1 191 P62760 191 100% 0 0
NP_001353735.1 191 P62760 191 100% 0 0
NP_003376.2 191 P62760 191 100% 0 0

Chromosomal Locations for CCDS 1689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 17592075 17592236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17649410 17649625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17655197 17655394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAGCAGAATAGCAAACTGGCCCCTGAAGTGATGGAGGACCTGGTGAAGAGCACAGAGTTTAATG
AGCATGAACTCAAGCAGTGGTACAAAGGATTTCTCAAGGACTGTCCAAGTGGGAGGCTAAATCTCGAGGA
ATTTCAGCAGCTCTATGTGAAGTTCTTTCCTTATGGAGACGCCTCCAAGTTTGCCCAGCATGCCTTCCGA
ACCTTCGACAAGAATGGGGACGGCACCATTGACTTCCGAGAGTTCATCTGCGCTCTGTCCATCACCTCCA
GGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAATATGTATGACCTGGATGGTGATGGCAAGATCAC
CCGAGTGGAGATGCTGGAGATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATCATGATGAAAATG
AATGAGGATGGCCTGACGCCTGAGCAGCGAGTAGACAAGATTTTCAGCAAGATGGATAAGAACAAAGATG
ACCAGATTACACTGGATGAATTCAAAGAAGCTGCAAAGAGCGACCCTTCCATTGTATTACTTCTGCAGTG
CGACATCCAGAAATGA

Translation (191 aa):
MGKQNSKLAPEVMEDLVKSTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQLYVKFFPYGDASKFAQHAFR
TFDKNGDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYKMVGTVIMMKM
NEDGLTPEQRVDKIFSKMDKNKDDQITLDEFKEAAKSDPSIVLLLQCDIQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH