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Report for CCDS16468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16468.1 Public Mus musculus 2 Pamr1 23 108 98 CCDS HistoryNCBI Gene:210622Re-query CCDS DB by CCDS ID:16468.1Re-query CCDS DB by GeneID:210622See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028612.7 ENSMUSP00000028612.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028612.7Link to Ensembl Protein Viewer:ENSMUSP00000028612.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028612Re-query CCDS DB by Protein ID:ENSMUSP00000028612
Original member Current member NCBI NM_173749.4 NP_776110.3 Accepted alive Link to Nucleotide Sequence:NM_173749.4Link to Protein Sequence:NP_776110.3Re-query CCDS DB by Nucleotide ID:NM_173749Re-query CCDS DB by Protein ID:NP_776110Link to BLAST:NP_776110.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776110.3 720 Q8BU25 720 100% 0 0

Chromosomal Locations for CCDS 16468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 102550192 102550264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102580733 102580909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102586595 102586723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102609862 102609976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102611562 102611779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102614836 102614943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102634328 102634540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102636174 102636240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102639211 102639443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102640667 102640959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 102641984 102642520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGAGCTAGACAGATGGGCGCAGTTGGGGCTGGTGTTCCTGCAGCTCCTTCTCATCTCATCGTTGCCAA
GAGAGTACACGGTCATTAATGAAGCCTGTCCCGGAGCTGAGTGGAACATCATGTGTAGAGAATGTTGTGA
ATATGATCAGATTGAATGCCTCTGCCCAGGAAAGAAGGAAGTGGTGGGTTACACCATCCCATGCTGCAGG
AATGAGGATAATGAATGTGACTCCTGTCTAATTCACCCAGGTTGTACCATCTTTGAAAACTGCAAGAGCT
GCCGCAATGGCTCCTGGGGCGGAACTCTGGATGACTTCTACGTGAAGGGATTCTACTGCGCAGAGTGCAG
GGCAGGCTGGTACGGAGGAGACTGCATGCGATGTGGCCAGGTTCTTCGAGCCTCAAAGGGTCAGATCTTG
TTGGAGAGCTATCCCTTAAACGCTCACTGTGAATGGACTATTCATGCCAGACCTGGGTTTATCATCCAGT
TGAGGTTTGGTATGCTGAGCCTAGAGTTTGACTACATGTGCCAATATGACTATGTGGAGGTCCGCGATGG
GGATAATAGTGACAGCCCTATCATCAAGCGTTTCTGTGGCAACGAGAGGCCAGCTCCCATCAGGAGCACT
GGCTCTTCACTCCATGTCCTTTTCCATTCTGATGGCTCCAAGAACTTCGATGGCTTCCACGCTGTCTTTG
AGGAGATCACAGCGTGCTCCTCATCCCCTTGTTTCCATGATGGCACATGCCTCCTTGACACCACTGGGTC
TTTCAAGTGTGCCTGCCTGGCTGGCTACACTGGGCAGCGCTGTGAAAATCTACTTGAAGAAAGAAACTGC
TCAGACCTTGGGGGGCCAGTCAATGGGTACAAGAAAATCACAGAAGGTCCTGGACTTCTCAATGAGCGCC
ATGTAAAAATTGGCACGGTTGTGTCTTTCTTTTGTAACGGCTCATACGTTCTGAGTGGCAATGAGAAACG
AACTTGCCAGCAGAATGGAGAGTGGTCAGGAAAGCAACCTGTCTGCATGAAAGCCTGCCGGGAACCGAAG
ATCTCAGACCTGGTGAGAAGGAGAGTCCTTTCGATGCAGGTTCAGTCAAGGGAGACACCATTACATCAGC
TTTATTCCACGGCTTTCAGCAAGCAGAAATTGCAGGATGCCTCTACCAAAAAGCCAGCCCTTCCATTTGG
AGACCTGCCCCCTGGATACCAACATCTGCACACCCAAGTCCAGTATGAGTGCATCTCGCCCTTCTACCGC
CGCCTGGGAAGCAGCAGGAGGACATGCCTGAGAACTGGGAAGTGGAGTGGGCGGGCCCCGTCCTGTATCC
CAATCTGTGGAAAAATCGAGAGCACTCCTTCTCCAAAGACCCAAGGCACCCGCTGGCCATGGCAGGCAGC
CATCTACCGGAGGACCAGTGGTGTACACGATGGTGGTCTGCACAAAGGTGCATGGTTCTTGGTCTGCAGT
GGTGCCCTGGTGAATGAACGGACTGTGGTTGTGGCTGCCCACTGTGTGACTGAGCTGGGGAAGGCCACCA
TCATCAAGACAGCAGACCTCAAGGTTGTCTTGGGAAAATTCTACAGGGACGATGATCGGGATGAGAAGAG
CATCCAGAATTTACGGGTTTCTGCTATCATTCTGCACCCCAACTATGACCCTATCCTGCTTGACACTGAC
ATCGCTGTTCTGAAGCTCCTAGACAAAGCTCGCATCAGTACCCGTGTCCAACCCATCTGCCTGGCTACCA
CTCGGGACCTCAGCACCTCTTTCCAGGAATCCCACATCACTGTGGCTGGCTGGAACATCCTGGCAGATGT
GAGGAGCCCTGGCTTTAAGAATGATACCTTACATTATGGAATGGTCAGAGTGGTAGACCCAATGCTTTGT
GAGGAACAGCATGAAGACCATGGCATTCCAGTTAGTGTCACTGACAACATGTTCTGTGCCAGCAAAGATC
CCAGTACCCCTTCTGACATCTGCACTGCAGAGACAGGGGGCATCGCTGCTTTGTCCTTCCCAGGCCGAGC
ATCCCCCGAGCCACGCTGGCATTTGGTGGGGCTGGTCAGCTGGAGCTATGACAAGACATGTAGCAATGGC
CTATCCACAGCCTTCACAAAGGTGTTGCCGTTCAAAGACTGGATTGAGAGAAACATGAAATGA

Translation (720 aa):
MELDRWAQLGLVFLQLLLISSLPREYTVINEACPGAEWNIMCRECCEYDQIECLCPGKKEVVGYTIPCCR
NEDNECDSCLIHPGCTIFENCKSCRNGSWGGTLDDFYVKGFYCAECRAGWYGGDCMRCGQVLRASKGQIL
LESYPLNAHCEWTIHARPGFIIQLRFGMLSLEFDYMCQYDYVEVRDGDNSDSPIIKRFCGNERPAPIRST
GSSLHVLFHSDGSKNFDGFHAVFEEITACSSSPCFHDGTCLLDTTGSFKCACLAGYTGQRCENLLEERNC
SDLGGPVNGYKKITEGPGLLNERHVKIGTVVSFFCNGSYVLSGNEKRTCQQNGEWSGKQPVCMKACREPK
ISDLVRRRVLSMQVQSRETPLHQLYSTAFSKQKLQDASTKKPALPFGDLPPGYQHLHTQVQYECISPFYR
RLGSSRRTCLRTGKWSGRAPSCIPICGKIESTPSPKTQGTRWPWQAAIYRRTSGVHDGGLHKGAWFLVCS
GALVNERTVVVAAHCVTELGKATIIKTADLKVVLGKFYRDDDRDEKSIQNLRVSAIILHPNYDPILLDTD
IAVLKLLDKARISTRVQPICLATTRDLSTSFQESHITVAGWNILADVRSPGFKNDTLHYGMVRVVDPMLC
EEQHEDHGIPVSVTDNMFCASKDPSTPSDICTAETGGIAALSFPGRASPEPRWHLVGLVSWSYDKTCSNG
LSTAFTKVLPFKDWIERNMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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