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Report for CCDS16421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16421.1 Public Mus musculus 2 Celf1 23 108 98 CCDS HistoryNCBI Gene:13046Re-query CCDS DB by CCDS ID:16421.1Re-query CCDS DB by GeneID:13046See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068747.13 ENSMUSP00000070438.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068747.13Link to Ensembl Protein Viewer:ENSMUSP00000070438.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068747Re-query CCDS DB by Protein ID:ENSMUSP00000070438
Original member Current member EBI ENSMUST00000111449.7 ENSMUSP00000107076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111449.7Link to Ensembl Protein Viewer:ENSMUSP00000107076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111449Re-query CCDS DB by Protein ID:ENSMUSP00000107076
Original member Current member EBI ENSMUST00000111451.9 ENSMUSP00000107078.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111451.9Link to Ensembl Protein Viewer:ENSMUSP00000107078.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111451Re-query CCDS DB by Protein ID:ENSMUSP00000107078
Original member Current member EBI ENSMUST00000177642.7 ENSMUSP00000136109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177642.7Link to Ensembl Protein Viewer:ENSMUSP00000136109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177642Re-query CCDS DB by Protein ID:ENSMUSP00000136109
Original member NCBI NM_001244891.1 NP_001231820.1 Updated not alive Link to Nucleotide Sequence:NM_001244891.1Link to Protein Sequence:NP_001231820.1Re-query CCDS DB by Nucleotide ID:NM_001244891Re-query CCDS DB by Protein ID:NP_001231820
Current member NCBI NM_001244891.2 NP_001231820.1 Accepted alive Link to Nucleotide Sequence:NM_001244891.2Link to Protein Sequence:NP_001231820.1Re-query CCDS DB by Nucleotide ID:NM_001244891Re-query CCDS DB by Protein ID:NP_001231820Link to BLAST:NP_001231820.1
Original member NCBI NM_001244903.1 NP_001231832.1 Updated not alive Link to Nucleotide Sequence:NM_001244903.1Link to Protein Sequence:NP_001231832.1Re-query CCDS DB by Nucleotide ID:NM_001244903Re-query CCDS DB by Protein ID:NP_001231832
Current member NCBI NM_001244903.2 NP_001231832.1 Accepted alive Link to Nucleotide Sequence:NM_001244903.2Link to Protein Sequence:NP_001231832.1Re-query CCDS DB by Nucleotide ID:NM_001244903Re-query CCDS DB by Protein ID:NP_001231832Link to BLAST:NP_001231832.1
Original member NCBI NM_198683.2 NP_941955.1 Updated not alive Link to Nucleotide Sequence:NM_198683.2Link to Protein Sequence:NP_941955.1Re-query CCDS DB by Nucleotide ID:NM_198683Re-query CCDS DB by Protein ID:NP_941955
Current member NCBI NM_198683.3 NP_941955.1 Accepted alive Link to Nucleotide Sequence:NM_198683.3Link to Protein Sequence:NP_941955.1Re-query CCDS DB by Nucleotide ID:NM_198683Re-query CCDS DB by Protein ID:NP_941955Link to BLAST:NP_941955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231820.1 486 P28659-1 486 100% 0 0
NP_001231832.1 486 P28659-1 486 100% 0 0
NP_941955.1 486 P28659-1 486 100% 0 0

Chromosomal Locations for CCDS 16421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90998590 90998767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91001006 91001088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91001462 91001510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91003211 91003345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91003811 91003890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91004701 91004862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91006620 91006695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91008172 91008300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91009205 91009315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91010393 91010578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91012699 91012842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91013238 91013365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGAACGGCACCCTGGACCACCCAGACCAACCAGATCTTGATGCTATCAAGATGTTTGTGGGCCAGGTTC
CAAGGACCTGGTCTGAGAAAGACTTGAGGGAGCTTTTTGAGCAGTATGGTGCTGTCTATGAAATCAACAT
CCTAAGGGATAGGAGCCAAAACCCTCCTCAGAGCAAAGGGTGCTGTTTTGTTACATTTTACACCCGTAAA
GCTGCATTAGAAGCTCAGAATGCTCTCCATAACATGAAGGTCCTCCCTGGGATGCATCACCCTATACAGA
TGAAGCCTGCTGACAGTGAAAAGAACAATGCTGTGGAAGACAGGAAGCTCTTTATTGGTATGATTTCCAA
GAAGTGTACTGAAAATGACATCCGAGTCATGTTTTCTTCGTTTGGACAGATTGAAGAGTGCCGGATATTG
CGGGGACCTGATGGCTTGAGCAGAGGTTGTGCATTTGTGACTTTTACTACAAGAACCATGGCACAGACAG
CTATCAAAGCAATGCACCAAGCACAAACCATGGAGGGTTGCTCATCCCCAATGGTGGTAAAGTTTGCCGA
CACCCAGAAGGACAAAGAACAGAAGAGAATGGCCCAGCAGCTCCAGCAGCAGATGCAGCAGATCAGTGCA
GCGTCTGTGTGGGGAAACCTGGCTGGTCTGAACACACTTGGACCCCAGTACTTAGCACTTTATTTGCAGC
TCCTACAGCAGACTGCCTCCTCTGGGAACCTCAACACCCTGAGCAGCCTCCACCCAATGGGAGGGTTAAA
TGCAATGCAGCTACAGAATTTGGCTGCACTAGCTGCTGCAGCTAGTGCAGCTCAGAACACACCAAGTGGT
ACCAATGCTCTCACTACATCCAGCAGTCCCCTCAGCGTACTCACCAGTTCAGGGTCTTCACCGAGCTCCA
GCAGCAGTAATTCTGTCAACCCCATAGCCTCACTTGGAGCCCTGCAAACATTGGCCGGAGCAACAGCTGG
CCTCAACGTTGGCTCATTGGCAGGGATGGCTGCTTTGAATGGTGGTCTGGGCAGCAGTGGCCTTTCCAAT
GGCACTGGGAGTACCATGGAAGCCCTCACCCAGGCGTATTCTGGTATCCAGCAATATGCTGCTGCAGCCC
TCCCCACTCTGTACAACCAGAATTTATTGACACAGCAGAGTATTGGTGCTGCTGGAAGCCAGAAGGAAGG
TCCAGAAGGAGCCAACCTGTTCATCTATCACCTGCCCCAGGAGTTTGGAGACCAGGACTTACTGCAGATG
TTTATGCCCTTTGGGAATGTCGTGTCGGCCAAGGTTTTCATAGACAAGCAGACAAACCTGAGCAAGTGCT
TTGGTTTTGTAAGTTATGACAATCCTGTCTCAGCTCAAGCTGCCATCCAGTCCATGAACGGCTTTCAAAT
TGGAATGAAGAGGCTTAAAGTGCAGCTCAAACGTTCGAAGAATGATAGTAAGCCCTACTGA

Translation (486 aa):
MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRK
AALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRIL
RGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISA
ASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSG
TNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAALNGGLGSSGLSN
GTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQM
FMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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