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Report for CCDS16315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16315.1 Public Mus musculus 2 Or9m1 23 108 98 CCDS HistoryNCBI Gene:258641Re-query CCDS DB by CCDS ID:16315.1Re-query CCDS DB by GeneID:258641See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099844.1 ENSMUSP00000097432.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099844.1Link to Ensembl Protein Viewer:ENSMUSP00000097432.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099844Re-query CCDS DB by Protein ID:ENSMUSP00000097432
Original member Current member EBI ENSMUST00000215862.1 ENSMUSP00000148909.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215862.1Link to Ensembl Protein Viewer:ENSMUSP00000148909.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215862Re-query CCDS DB by Protein ID:ENSMUSP00000148909
Original member Current member EBI ENSMUST00000215017.1 ENSMUSP00000149078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215017.1Link to Ensembl Protein Viewer:ENSMUSP00000149078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215017Re-query CCDS DB by Protein ID:ENSMUSP00000149078
Original member Current member NCBI NM_146647.2 NP_666858.2 Accepted alive Link to Nucleotide Sequence:NM_146647.2Link to Protein Sequence:NP_666858.2Re-query CCDS DB by Nucleotide ID:NM_146647Re-query CCDS DB by Protein ID:NP_666858Link to BLAST:NP_666858.2

Chromosomal Locations for CCDS 16315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87902742 87903674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAGTGTGGAGAACAGCACTGTGAAGACTGAATTCTATCTCCTGGGATTTAGTGATCATCCAGAGCTCC
AGAGTCTCCTATTTGCTGTGTTTTTCTTCATCTACTCCATTACTCTGATGGGGAATATTGGCATGATCTT
ATTGATCACAGTCAGTCCTAATTTACACATTCCCATGTACTTTTTCCTCTGTATGCTGTCCTTCATAGAT
GCATGTTACTCTTCTGTCATTGCCCCCAAATTACTTGTGGATCTGATTTCTGACAAGAAGGTGATTTCTT
ACAATGGCTGTGCTACACAGTTGTATTTTTTCTGCTCTCTGGTTGATACAGAATCTTTCCTTTTGGCTGC
CATGGCTTATGACAGGTACATTGCAATTTGTAATCCCCTGCTTTATACTGTAATTATGTCCAAAAGAGTC
TGTACTCACCTGGCATTTGGAGCATTCTTGGGTGGAACTATGAGTTCAATAATCCATACTACTAATACTT
TCCAATTGTCATTCTGCTCCAAAGTAATTAACCATTTCTTTTGTGATATCTCTCCACTCTTCTCTCTGTC
TTGCACTGATACCTATACACATGACATTATACTCGTGGTGTTTGCAAGTTTGGTGGAAGCTGTCTCTCTT
CTTGCTGTTCTGCTCTCTTATATGTATATTATAGTGGCCATTCTTAAAACAGGTTCTGCAGAGGGAAGAA
AGAAAGGGTTCTCTACTTGTGCTTCTCACCTGACAGTAGTTACTATTTATCATGGTACTCTGATTTTCAT
TTATTTGCGTCCTAGTACAGGCCATTCAATGGATATTGACAAAATGACTTCTGTGTTCTATACATTGATT
ATACCCATGCTAAATCCTTTGATATATAGTCTCAGGAACAAAGACGTCAAATTTGCGTTTAGGAAAATTA
TGAGCAAGAAATCATTTTCTTAG

Translation (310 aa):
MSVENSTVKTEFYLLGFSDHPELQSLLFAVFFFIYSITLMGNIGMILLITVSPNLHIPMYFFLCMLSFID
ACYSSVIAPKLLVDLISDKKVISYNGCATQLYFFCSLVDTESFLLAAMAYDRYIAICNPLLYTVIMSKRV
CTHLAFGAFLGGTMSSIIHTTNTFQLSFCSKVINHFFCDISPLFSLSCTDTYTHDIILVVFASLVEAVSL
LAVLLSYMYIIVAILKTGSAEGRKKGFSTCASHLTVVTIYHGTLIFIYLRPSTGHSMDIDKMTSVFYTLI
IPMLNPLIYSLRNKDVKFAFRKIMSKKSFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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