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Report for CCDS16140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16140.1 Public Mus musculus 2 Hoxd11 23 108 98 CCDS HistoryNCBI Gene:15431Re-query CCDS DB by CCDS ID:16140.1Re-query CCDS DB by GeneID:15431See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000142312.2 ENSMUSP00000122582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142312.2Link to Ensembl Protein Viewer:ENSMUSP00000122582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142312Re-query CCDS DB by Protein ID:ENSMUSP00000122582
Original member Current member NCBI NM_008273.2 NP_032299.1 Accepted alive Link to Nucleotide Sequence:NM_008273.2Link to Protein Sequence:NP_032299.1Re-query CCDS DB by Nucleotide ID:NM_008273Re-query CCDS DB by Protein ID:NP_032299Link to BLAST:NP_032299.1

Chromosomal Locations for CCDS 16140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74682393 74683167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74683903 74684138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGAACGACTTTGACGAGTGCGGCCCCAGCGCAGCCAGCATGTACCTGCCGGGCTGCGCTTACTACGTGG
CCCCGTCGGACTTCGCCAGCAAGCCGTCGTTCCTCTCGCAGCCGTCCTCGTGCCAGATGACTTTCCCCTA
CTCCTCCAACCTGGCGCCACACGTCCAGCCCGTGCGGGAGGTGGCCTTTCGCGACTACGGCCTGGAGCGC
GCCAAGTGGCCGTACCGCGGCGGAGGCGGCGGTGGCGCGGGGGGCGGCGGCGGCGGCGGTCCCGGCGGGG
GTGGTGGCGGCTCCGGGGGCTACGCTCCCTACTACGCCGCGGCAGCGGCGGCAGCGGCGGCAGCGGCGGC
GGCCGAGGAGGCGGCCATGCAACGAGATCTGCTCCCGCCCGCCGGCCGCCGGCCAGACGTGCTCTTCAAG
GCTCCCGAGCCGGTGTGCGGCGCTCCCGGGCCGCCGCACGGTCCGGCGGCCGCAGCCTCTAACTTCTACA
GCGCCGTGGGTCGCAACGGCATCCTGCCCCAGGGCTTTGATCAGTTCTACGAGGCGGCGCCCGGACCCCC
CTTCGCCGGCCCGCAGCCCCAGCCCGCTCCCGCGCCGCCACAGCCCGAGGGCGCCGCTGACAAGGGCGAC
CCCAAGCCAGGGGCTGGTGGCGGCGGGGGCAGTCCCTGCGCCAAGGCGACTCCGGGCCCAGAGCCCAAGG
GGGCGGCGGAAGGCGGTGGCGGTGAAGGCGAGGGCCCCCCGGGGGAGGCGGGGGCCGAAAAGAGCGGCGG
CACAGTGGCCCCCCAGAGGTCCCGGAAAAAGCGCTGTCCCTACACCAAGTACCAGATCCGCGAACTGGAA
CGCGAGTTTTTCTTTAATGTATACATAAACAAAGAGAAAAGACTCCAACTCTCTCGGATGCTCAACCTCA
CTGACCGGCAAGTCAAAATCTGGTTCCAGAATCGCAGGATGAAAGAAAAGAAACTGAACAGGGACCGTCT
GCAATATTTCACTGGAAACCCCTTATTTTGA

Translation (336 aa):
MNDFDECGPSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFRDYGLER
AKWPYRGGGGGGAGGGGGGGPGGGGGGSGGYAPYYAAAAAAAAAAAAAEEAAMQRDLLPPAGRRPDVLFK
APEPVCGAPGPPHGPAAAASNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPQPAPAPPQPEGAADKGD
PKPGAGGGGGSPCAKATPGPEPKGAAEGGGGEGEGPPGEAGAEKSGGTVAPQRSRKKRCPYTKYQIRELE
REFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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