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Report for CCDS1581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1581.1 Public Homo sapiens 1 TAF5L 24 110 108 CCDS HistoryNCBI Gene:27097Re-query CCDS DB by CCDS ID:1581.1Re-query CCDS DB by GeneID:27097See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258281.7 ENSP00000258281.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258281.7Link to Ensembl Protein Viewer:ENSP00000258281.2Re-query CCDS DB by Nucleotide ID:ENST00000258281Re-query CCDS DB by Protein ID:ENSP00000258281
Original member Current member NCBI NM_014409.4 NP_055224.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014409.4Link to Protein Sequence:NP_055224.1Re-query CCDS DB by Nucleotide ID:NM_014409Re-query CCDS DB by Protein ID:NP_055224Link to BLAST:NP_055224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055224.1 589 O75529-1 589 100% 0 0

Chromosomal Locations for CCDS 1581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 229594297 229595094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229602195 229602919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229610106 229610210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 229614341 229614482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGAAACGAGTGCGTACCGAGCAGATTCAGATGGCAGTGTCCTGCTACCTCAAACGCCGGCAGTACGTGG
ACTCAGATGGTCCCCTGAAGCAAGGACTGCGGCTGTCACAGACTGCTGAAGAGATGGCGGCCAATCTAAC
AGTGCAATCAGAATCTGGTTGTGCCAACATAGTGTCTGCAGCCCCTTGCCAGGCAGAACCCCAGCAATAT
GAAGTACAGTTTGGACGACTGCGGAATTTTCTCACTGATTCTGATTCCCAGCATAGCCACGAAGTGATGC
CTCTCCTCTATCCTCTCTTTGTCTACCTCCATCTCAACCTGGTCCAAAACAGTCCGAAGAGCACAGTGGA
AAGTTTTTACAGCCGCTTCCATGGAATGTTTCTGCAGAATGCTAGCCAGAAGGATGTCATTGAGCAGCTA
CAGACCACTCAAACCATCCAGGACATCCTATCTAACTTCAAGCTTCGAGCATTCCTAGATAACAAGTACG
TGGTCCGTCTCCAAGAAGACAGCTACAACTACCTTATCCGCTACCTCCAAAGTGACAACAATACTGCCCT
GTGCAAAGTCCTCACCTTACATATTCATCTTGACGTGCAGCCTGCCAAGAGAACAGACTATCAGCTGTAT
GCCAGTGGCAGCTCCTCCCGCAGTGAGAACAACGGTTTGGAGCCCCCCGACATGCCCAGCCCTATTCTGC
AGAACGAGGCTGCCCTAGAGGTCTTACAGGAGAGCATTAAGCGAGTCAAGGATGGGCCTCCCTCCCTCAC
TACCATCTGCTTCTATGCCTTCTATAACACAGAGCAGCTGTTGAACACTGCAGAAATCTCCCCCGATAGC
AAGCTGCTTGCTGCTGGGTTTGACAACTCCTGTATAAAACTTTGGAGTTTACGATCCAAGAAGTTAAAAT
CAGAGCCCCACCAAGTAGACGTGTCCCGCATCCATTTGGCTTGTGATATTCTGGAGGAGGAGGATGATGA
GGATGATAATGCAGGCACGGAGATGAAGATACTGCGGGGCCACTGCGGACCAGTGTACAGCACGAGGTTC
CTCGCGGACAGCTCAGGGTTGCTCTCTTGTTCTGAAGACATGTCCATCAGATACTGGGATCTGGGGAGTT
TCACCAACACTGTGTTGTACCAAGGACATGCCTATCCTGTGTGGGATCTGGACATCAGTCCATATAGCCT
GTACTTCGCCAGCGGGTCCCACGACCGCACCGCCAGGCTGTGGTCATTTGATCGGACGTACCCGCTGAGG
ATATATGCAGGACACCTGGCAGATGTGGACTGTGTCAAATTCCACCCTAATTCAAACTACTTGGCCACGG
GCTCAACCGACAAGACCGTCCGGCTGTGGAGCGCTCAGCAGGGGAACTCGGTGAGGCTTTTCACAGGCCA
CCGTGGCCCCGTGCTTTCTCTCGCCTTTTCTCCCAACGGTAAGTACTTGGCGTCTGCTGGCGAGGACCAG
CGGTTGAAGCTGTGGGACTTGGCCTCTGGGACCCTTTATAAAGAGTTGAGAGGCCACACAGACAATATCA
CCAGCCTCACCTTCAGTCCAGACAGCGGCTTGATTGCCTCTGCCTCCATGGACAACTCGGTGCGCGTCTG
GGACATCAGGAACACTTACTGCAGTGCACCTGCCGACGGCTCCTCCAGCGAGCTCGTGGGCGTGTACACC
GGGCAGATGAGCAACGTCCTGAGCGTGCAGTTCATGGCCTGTAACCTTCTTCTGGTGACTGGAATTACAC
AAGAAAATCAGGAACATTAA

Translation (589 aa):
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQY
EVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQKDVIEQL
QTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLTLHIHLDVQPAKRTDYQLY
ASGSSSRSENNGLEPPDMPSPILQNEAALEVLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDS
KLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRF
LADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQ
RLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSSSELVGVYT
GQMSNVLSVQFMACNLLLVTGITQENQEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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