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Report for CCDS15614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15614.1 Public Mus musculus 1 Nsl1 23 108 98 CCDS HistoryNCBI Gene:381318Re-query CCDS DB by CCDS ID:15614.1Re-query CCDS DB by GeneID:381318See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078259.7 ENSMUSP00000077380.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078259.7Link to Ensembl Protein Viewer:ENSMUSP00000077380.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078259Re-query CCDS DB by Protein ID:ENSMUSP00000077380
Original member Current member NCBI NM_198654.3 NP_941056.3 Accepted alive Link to Nucleotide Sequence:NM_198654.3Link to Protein Sequence:NP_941056.3Re-query CCDS DB by Nucleotide ID:NM_198654Re-query CCDS DB by Protein ID:NP_941056Link to BLAST:NP_941056.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941056.3 281 Q8K305 281 98.9324% 0 3

Chromosomal Locations for CCDS 15614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191063039 191063272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191065175 191065253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191069990 191070120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191071178 191071232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191080489 191080556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191082171 191082449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCGGCTGTCTCTGAAACAGTGCTCGTCTCCGCCCCGCAGGACCACGATGCCCAGGCCGCCTCAGACC
CTCAGGCCACGGCAGCAGACTCTCCCCTAGAGGACTTCCGAGTGCGCTGCACCTTGAAGAGGGCGGTGAT
GGAAGTGATGGAGATGTGCGGTCGCTTCGTGCAGGAGCTCGGGGCCGTGCTGCCGGAGGACGTCCGCGAG
CTCGCGCTGCGGGACGCACAGTGGACATTTGAGTCGGCTGTGCAGGAGAACGTCAGCTTTAACGGACAGG
CCTGGGAGGAAGCTAAAGAGCATGGCTTAATGGATTCTGACATCAAAGTGCTTGAAGATGAATTTGATGA
GCTCATAGTAGATGTGGCAACCAAACGGAGGCAGTATCCCAGAAGGATCCTTGAGAGTGTCATCAAAACC
TTGAAAGCACAGCACGCGAGTCTGAAGCAGTATCACCCTGTTGTACATCCTCTGGACCTGAAATGTGACC
CTGACCCAGCTTCTCGTGTAGAAGATTTGAAATGCCGCGGAGAAGCCATAGCTAAGGAAATGAGTGAGGC
CATGAAGGCTTTGCCTGTGCTAATTGAACAAGGAGAAGGCTTTTCCCAGGTCTTAAAGATGCGACCTGTC
ATCCAGCTACAGAGGATCAACCAGGAAGTCTTCTCCAGCCTCTACAGGAAAGCTGACTCCAAGCCTGACA
CACGTGTGACACACGTAGAAACCACACCAGCCGAGACTGGAGCCAGGAAGGCCTCCGACATTGTGCTAAA
GAGAAAGAAAGCCCCAGACTGTGCCCAGAGAAAGCGCTACCCGCTGCGGCTGCAGAGAATTAATCTCGAT
ATGTGA

Translation (281 aa):
MAAVSETVLVSAPQDHDAQAASDPQATAADSPLEDFRVRCTLKRAVMEVMEMCGRFVQELGAVLPEDVRE
LALRDAQWTFESAVQENVSFNGQAWEEAKEHGLMDSDIKVLEDEFDELIVDVATKRRQYPRRILESVIKT
LKAQHASLKQYHPVVHPLDLKCDPDPASRVEDLKCRGEAIAKEMSEAMKALPVLIEQGEGFSQVLKMRPV
IQLQRINQEVFSSLYRKADSKPDTRVTHVETTPAETGARKASDIVLKRKKAPDCAQRKRYPLRLQRINLD
M


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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