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Report for CCDS15551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15551.1 Public Mus musculus 1 Exo1 23 108 98 CCDS HistoryNCBI Gene:26909Re-query CCDS DB by CCDS ID:15551.1Re-query CCDS DB by GeneID:26909See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039725.11 ENSMUSP00000039376.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039725.11Link to Ensembl Protein Viewer:ENSMUSP00000039376.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039725Re-query CCDS DB by Protein ID:ENSMUSP00000039376
Original member Current member NCBI NM_012012.4 NP_036142.2 Accepted alive Link to Nucleotide Sequence:NM_012012.4Link to Protein Sequence:NP_036142.2Re-query CCDS DB by Nucleotide ID:NM_012012Re-query CCDS DB by Protein ID:NP_036142Link to BLAST:NP_036142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036142.2 837 Q9QZ11 837 100% 0 0

Chromosomal Locations for CCDS 15551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175882908 175883068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175886690 175886809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175887578 175887701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175888724 175888861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175891934 175892146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175892874 175893061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175893741 175893834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175896128 175896353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175899389 175899632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175900880 175901453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175904336 175904437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175905796 175905989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175908430 175908565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGGGATTCAAGGGTTACTTCAGTTCATCCAAGAAGCTTCTGAACCTGTCAACGTGAAGAAGTACAAAG
GACAGGCAGTGGCTGTGGATACCTACTGTTGGCTTCACAAAGGGGCTATTGCTTGTGCTGAAAAGCTAGC
CAAAGGGGAACCTACAGATAGGTATGTAGGATTTTGTATGAAGTTTGTTAATATGCTGCTGTCTTATGGG
GTCAAGCCGATTCTCATATTTGACGGATGTACTCTACCTTCTAAAAAGGAAGTGGAGCGGTCTCGAAGAG
AGAGACGACAAAGCAACCTTCTTAAAGGGAAGCAGCTTCTTCGAGAGGGCAAAGTGTCAGAAGCCCGAGA
CTGCTTCGCTCGCTCTATCAACATCACGCACGCCATGGCCCACAAAGTAATAAAAGCTGCTCGGGCCCTA
GGAGTGGATTGCCTCGTGGCTCCGTATGAAGCTGATGCTCAGTTGGCCTACCTTAACAAGGCTGGCATCG
TGCAGGCTGTCATCACAGAGGACTCTGACCTCCTCGCATTTGGCTGTAAGAAGGTGATTTTAAAAATGGA
TCAGTTTGGAAATGGACTGGAAGTGGACCAGGCACGGCTAGGCATGTGCAAGCAGCTTGGGGATGTATTC
ACGGAGGAGAAGTTCCGGTACATGTGCATTCTGTCCGGCTGTGACTACCTCGCCTCCCTTCGTGGGATCG
GCTTAGCCAAGGCCTGCAAAGTGCTGAGACTGGCCAATAACCCCGATATCGTGAAGGTTATCAAGAAAAT
TGGGCATTATCTCAGGATGAATATAACGGTGCCCGAGGATTACATCACAGGATTTATTCGTGCCAACAAT
ACTTTCCTCTACCAGCTCGTGTTCGACCCCATCCAAAGGAAGCTGGTCCCTCTGAATGCCTACGGAGATG
ACGTTAATCCCGAAACACTGACTTACGCTGGGCAGTACGTCGGTGACTCTGTAGCTCTTCAGATCGCCCT
TGGAAATAGAGATGTAAATACTTTTGAACAGATTGATGACTACAGTCCAGACACCATGCCAGCCCACTCA
AGAAGCCACAGCTGGAATGAGAAAGCAGGTCAGAAACCACCTGGTACCAACAGCATTTGGCACAAGAATT
ATTGTCCTAGACTTGAGGTGAACAGTGTCTCCCACGCTCCTCAACTGAAGGAAAAGCCAAGCACTTTGGG
CCTTAAACAAGTGATTAGTACTAAAGGGTTAAATCTTCCCAGGAAGTCTTGTGTGTTGAAAAGACCAAGA
AATGAAGCGCTGGCTGAAGATGACCTGTTGAGCCAGTATTCGTCAGTTTCAAAGAAGATCAAGGAAAATG
GCTGTGGGGATGGCACATCACCTAACTCTTCTAAAATGTCCAAGTCCTGCCCCGATTCTGGGACTGCTCA
CAAGACAGATGCACACACCCCGTCTAAGATGAGGAATAAATTTGCAACGTTCTTACAGAGGAGGAATGAA
GAAAGCGGTGCAGTCGTGGTTCCAGGGACCAGAAGCAGGTTTTTTTGCAGTTCTCAGGATTTTGACAATT
TCATACCAAAAAAAGAAAGCGGCCAGCCTCTAAATGAAACTGTGGCCACTGGCAAAGCCACCACCAGCCT
CCTCGGGGCACTGGACTGTCCAGACACGGAAGGCCACAAGCCGGTTGATGCAAATGGGACGCACAATCTG
AGCTCTCAGATTCCAGGCAATGCAGCTGTGTCTCCTGAGGATGAGGCTCAGTCCTCTGAGACCAGCAAAC
TCTTGGGGGCCATGTCCCCACCCAGTCTGGGGACACTAAGAAGCTGTTTCAGTTGGTCTGGCACTCTCAG
GGAATTTTCTCGAACTCCAAGTCCCTCAGCAAGCACTACATTGCAGCAGTTCCGGAGAAAGAGCGACCCC
CCTGCCTGTCTTCCTGAGGCCTCTGCCGTGGTCACTGACAGGTGCGACTCAAAGAGCGAGATGCTGGGTG
AGACGTCTCAGCCCTTGCACGAGCTGGGCTGCTCCTCGCGGTCTCAGGAAAGCATGGACTCCTCGTGCGG
CCTAAACACGTCGAGCCTGTCCCAGCCTTCCAGTAGGGATTCAGGTTCAGAGGAGTCGGATTGTAACAAT
AAGTCACTTGATAATCAAGGGGAACAGAACTCCAAGCAACACTTACCTCACTTTTCAAAGAAAGACGGAC
TTAGACGGAACAAGGTTCCTGGGCTCTGTAGGTCTAGTTCTATGGACTCTTTTTCTACAACCAAGATCAA
GCCCCTGGTGCCTGCCAGGGTCAGTGGCCTGAGCAAGAAGTCAGGAAGCATGCAGACGAGAAAACACCAT
GATGTGGAGAACAAGCCAGGCCTACAGACGAAGATCAGCGAGCTCTGGAAAAACTTTGGGTTTAAAAAAG
ATTCTGAAAAGCTTCCTTCTTGTAAGAAGCCCCTGTCTCCAGTCAAGGACAATATCCAACTCACTCCAGA
GACAGAAGATGAGATCTTTAACAAGCCCGAGTGTGTACGCGCTCAGAGAGCAATATTTCACTAA

Translation (837 aa):
MGIQGLLQFIQEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSYG
VKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCFARSINITHAMAHKVIKAARAL
GVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILKMDQFGNGLEVDQARLGMCKQLGDVF
TEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANN
TFLYQLVFDPIQRKLVPLNAYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNTFEQIDDYSPDTMPAHS
RSHSWNEKAGQKPPGTNSIWHKNYCPRLEVNSVSHAPQLKEKPSTLGLKQVISTKGLNLPRKSCVLKRPR
NEALAEDDLLSQYSSVSKKIKENGCGDGTSPNSSKMSKSCPDSGTAHKTDAHTPSKMRNKFATFLQRRNE
ESGAVVVPGTRSRFFCSSQDFDNFIPKKESGQPLNETVATGKATTSLLGALDCPDTEGHKPVDANGTHNL
SSQIPGNAAVSPEDEAQSSETSKLLGAMSPPSLGTLRSCFSWSGTLREFSRTPSPSASTTLQQFRRKSDP
PACLPEASAVVTDRCDSKSEMLGETSQPLHELGCSSRSQESMDSSCGLNTSSLSQPSSRDSGSEESDCNN
KSLDNQGEQNSKQHLPHFSKKDGLRRNKVPGLCRSSSMDSFSTTKIKPLVPARVSGLSKKSGSMQTRKHH
DVENKPGLQTKISELWKNFGFKKDSEKLPSCKKPLSPVKDNIQLTPETEDEIFNKPECVRAQRAIFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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