NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15486.1 Public Mus musculus 1 B4galt3 23 108 98 CCDS HistoryNCBI Gene:57370Re-query CCDS DB by CCDS ID:15486.1Re-query CCDS DB by GeneID:57370See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064272.9 ENSMUSP00000066353.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064272.9Link to Ensembl Protein Viewer:ENSMUSP00000066353.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064272Re-query CCDS DB by Protein ID:ENSMUSP00000066353
Original member Current member EBI ENSMUST00000111313.9 ENSMUSP00000106945.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111313.9Link to Ensembl Protein Viewer:ENSMUSP00000106945.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111313Re-query CCDS DB by Protein ID:ENSMUSP00000106945
Original member Current member NCBI NM_020579.2 NP_065604.2 Accepted alive Link to Nucleotide Sequence:NM_020579.2Link to Protein Sequence:NP_065604.2Re-query CCDS DB by Nucleotide ID:NM_020579Re-query CCDS DB by Protein ID:NP_065604Link to BLAST:NP_065604.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065604.2 395 Q91YY2 395 100% 0 0

Chromosomal Locations for CCDS 15486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171271743 171272001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171272521 171272756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171273953 171274143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171274266 171274388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171275882 171275986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171276106 171276379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTTGCGGAGGCTGCTGGAGAGACCCTGTACATTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTGATGA
TGTATCTGTCACTAGGGGGCTTCCGAAGTCTTAGTGCCCTGTTTGGTCGAGATCCGGGCCCAACATTCGA
CTATTCTCATCCCCACGATGTCTATAGTAACCTCAGTCACCTGCCCGCAGCCCCTGGAGCTGCAGGGGCT
CCTCCGGCTCAAGCATTGCCCTACTGTCCAGAAAGATCACCCTTCTTAGTGGGTCCTGTGTCAGTATCCT
TTAGCCCAGTGCCGTCACTAGCGGAGATTGTGGAGCGGAATCCCCGGGTGGAATCAGGGGGCCGGTACCG
TCCTGCAGGGTGTGAGCCTCGCTCCCGAACAGCCATAATTGTGCCCCATCGTGCCCGGGAGCACCACCTT
CGGCTGCTGCTCTATCACCTGCACCCTTTCCTGCAGCGCCAGCAGCTTGCGTACGGCATTTATGTCATCC
ACCAGGCTGGAAATGGAACGTTTAACAGGGCAAAGCTGCTGAACGTAGGGGTGAGGGAAGCCCTTCGTGA
TGAAGAATGGGACTGCTTGTTCTTACACGACGTGGACCTCCTTCCAGAAAACGACCATAACCTGTATGTG
TGCGACCCCCGGGGACCCCGCCACGTTGCTGTTGCCATGAACAAGTTTGGATACAGCCTCCCGTACCCCC
AGTACTTTGGCGGAGTTTCAGCGCTCACTCCCGACCAGTACCTGAAGATGAACGGCTTCCCCAACGAGTA
CTGGGGCTGGGGTGGCGAGGATGACGACATTGCTACCAGGGTCCGCCTGGCTGGGATGAAGATCTCTCGA
CCACCTACCTCTGTGGGACACTATAAGATGGTGAAGCACAGAGGGGATAAAGGAAATGAGGAAAATCCCC
ACAGATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCACTAACGTACCG
ACTGCTGGCAAGAGAGCTGGGTCCTCTCTATACCAACATCACCGCAGACATCGGGACTGACCCTCGGGGT
CCCCGGTCTCCCTCTGGTCCCCGATACCCACCTGGTTCCTCCCAGGCCTTCCGTCAAGAGATGCTGCAAC
GCCGGCCCCCAGCTAGGCCTGGCCCTCTGCCCACTGCCAACCACACAGCTCCCCGTGGCTCACACTGA

Translation (395 aa):
MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPAAPGAAGA
PPAQALPYCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTAIIVPHRAREHHL
RLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYV
CDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISR
PPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDGMNSLTYRLLARELGPLYTNITADIGTDPRG
PRSPSGPRYPPGSSQAFRQEMLQRRPPARPGPLPTANHTAPRGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH