NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15397.1 Public Mus musculus 1 Angptl1 23 108 98 CCDS HistoryNCBI Gene:72713Re-query CCDS DB by CCDS ID:15397.1Re-query CCDS DB by GeneID:72713See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027885.7 ENSMUSP00000027885.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027885.7Link to Ensembl Protein Viewer:ENSMUSP00000027885.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027885Re-query CCDS DB by Protein ID:ENSMUSP00000027885
Original member NCBI NM_028333.2 NP_082609.2 Updated not alive Link to Nucleotide Sequence:NM_028333.2Link to Protein Sequence:NP_082609.2Re-query CCDS DB by Nucleotide ID:NM_028333Re-query CCDS DB by Protein ID:NP_082609
Current member NCBI NM_028333.3 NP_082609.2 Accepted alive Link to Nucleotide Sequence:NM_028333.3Link to Protein Sequence:NP_082609.2Re-query CCDS DB by Nucleotide ID:NM_028333Re-query CCDS DB by Protein ID:NP_082609Link to BLAST:NP_082609.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082609.2 490 Q640P2-1 490 100% 0 0

Chromosomal Locations for CCDS 15397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156844606 156845425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156857083 156857276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156858360 156858630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156860415 156860602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGAAGGCTTTTGTTTGGACCCTAAGTGTACTACTCTTCCTACTGGGCAGTGGTCATTGCAAAGGAGGAC
AACTCAAAATAAAAAAAATAACCCAAAGGAGATATCCCCGTGCTACTGATGGGAAAGAGGAAGCAAAGAA
ATGTTCATATACATTCTTGGTACCTGAACAAAAAATAACAGGGCCAATCTGTGTCAACACCAAAGGTCAG
GATGCAGGCACTATTAAGGACATGATCACCAGGATGGACCTGGAGAACCTCAAGGATGTGCTGTCTAGGC
AGAAGCGGGAGATAGATGTCCTGCAGCTGGTGGTAGATGTGGACGGGAACATTGTAAACGAGGTGAAGCT
GCTGAGAAAGGAAAGCCGGAACATGAACTCCAGAGTCACGCAGCTCTACATGCAGCTACTACATGAGATC
ATCCGTAAAAGAGACAATTCACTCGAACTTTCCCAGCTGGAAAACAAAATCCTCAATGTCACCACAGAAA
TGCTGAAGATGGCAACAAGGTACAGGGAGCTAGAGGTGAAGTATGCGTCCTTGACGGATCTTGTCAATAA
CCAGTCTGTGACGATCACTGTATTGGAAGAGCAGTGCCTGAGGATGTTTTCCCGACAAGACCCCCACGCG
TCTCCCCCTCTTGTCCAGGTGGTACCGCGACACAGTCCTAACAGCCACCAGTACACCCCTGGTCTGCTGG
GAGGCAATGAGATACAGAGGGACCCAGGTTACCCCAGAGACGTAATGCCACCACCTGATCTGCCAACAGC
TCCCACGAAAAGCCCTTTCAAGATTCCAGCAGTGACTTTCATCAATGAAGGACCATTCAAAGACTGTCAG
CAAGCAAAGGAAGCTGGACACTCAGCCAGTGGAATTTACATGATTAAACCTGAAAACAGCAACGGTCTGA
TGCAGTTATGGTGTGAGAACAGTTTGGATCCTGGGGGTTGGACTGTTATTCAGAAAAGAACAGATGGCTC
TGTCAATTTCTTCAGAAACTGGGAAAATTATAAGAAAGGGTTTGGAAACATTGATGGAGAGTACTGGCTT
GGACTGGACAATATCTACAAGCTTAGTAATCAAGACAATTATAAGCTGATGATTGAACTAGAAGACTGGA
GCGAGAAGAAGGTCTATGCAGAATACAGCAGCTTTCGTCTGGAGCCCGAAAGTGACTACTACAGACTGCG
CCTGGGGACGTACCAGGGGAATGCTGGGGACTCTATGATGTGGCATAATGGTAAACAGTTCACCACGCTG
GACAGAGATAAAGATACGTACACAGGAAACTGCGCCCACTTCCATAAAGGAGGCTGGTGGTACAACGCCT
GTGCACACTCTAACCTCAACGGAGTATGGTACAGAGGTGGTCATTACAGAAGCAAGCACCAAGATGGCAT
TTTCTGGGCTGAATACAGAGGCGGGTCCTACTCCTTGAGGGCAGTACAGATGATGATCAAGCCTATTGAC
TGA

Translation (490 aa):
MKAFVWTLSVLLFLLGSGHCKGGQLKIKKITQRRYPRATDGKEEAKKCSYTFLVPEQKITGPICVNTKGQ
DAGTIKDMITRMDLENLKDVLSRQKREIDVLQLVVDVDGNIVNEVKLLRKESRNMNSRVTQLYMQLLHEI
IRKRDNSLELSQLENKILNVTTEMLKMATRYRELEVKYASLTDLVNNQSVTITVLEEQCLRMFSRQDPHA
SPPLVQVVPRHSPNSHQYTPGLLGGNEIQRDPGYPRDVMPPPDLPTAPTKSPFKIPAVTFINEGPFKDCQ
QAKEAGHSASGIYMIKPENSNGLMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWENYKKGFGNIDGEYWL
GLDNIYKLSNQDNYKLMIELEDWSEKKVYAEYSSFRLEPESDYYRLRLGTYQGNAGDSMMWHNGKQFTTL
DRDKDTYTGNCAHFHKGGWWYNACAHSNLNGVWYRGGHYRSKHQDGIFWAEYRGGSYSLRAVQMMIKPID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH