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Report for CCDS15259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15259.1 Public Mus musculus 1 Fcamr 23 108 98 CCDS HistoryNCBI Gene:64435Re-query CCDS DB by CCDS ID:15259.1Re-query CCDS DB by GeneID:64435See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027670.3 ENSMUSP00000027670.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027670.3Link to Ensembl Protein Viewer:ENSMUSP00000027670.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027670Re-query CCDS DB by Protein ID:ENSMUSP00000027670
Original member Current member NCBI NM_144960.2 NP_659209.2 Accepted alive Link to Nucleotide Sequence:NM_144960.2Link to Protein Sequence:NP_659209.2Re-query CCDS DB by Nucleotide ID:NM_144960Re-query CCDS DB by Protein ID:NP_659209Link to BLAST:NP_659209.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659209.2 535 Q2TB54-1 535 100% 0 0

Chromosomal Locations for CCDS 15259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130800950 130800988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130803219 130803276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130804543 130804683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130811371 130811709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130812591 130813347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130813994 130814112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130814499 130814653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGGACCAAGGTGCCCCAGCTAAGCCCAGTGAACAAAAGGTCCCCAGCCTGAGAACGAGATGGGAAATAC
TTCTTCTCACACTCTGTCTGCTCCATGGTTCATCCATGACCCCTCCACACAGAAGGTCACATTCCAGATG
GCTGCAGGCTGGCTCTCCTCAGTTCAGGACCCATCTCTACAATGTGGAAGCACACACAGCTCCCACGCCC
CTTTGCTGCTGGAAGAACTCCCTTTCAGGTACAAATGCATTGAGAGGCCCGCGACTGGTGACTGGGAACA
CTGGGGGAGCTGTCACCATCCATTGCCATTACGCCCCCTCCTCAGTCAACAGGCATCAAAGAAAATACTG
GTGCCGCCTGGGGTCTCCATTGTGGATCTGTCACACTGTCGTGTCCACCAACCAATACACTCACCCTGAC
TACCGTGGGCGCGCGGCTCTCACTGACATTCCACAGAGCGGTTTGTTTGTGGTGAGGCTGCTCCGACTGT
CCCTGGGTGACGTGGGACTTTACCGCTGTGGCATAGGAGACCGAAACGACATGCTATTCTTCAGCGTGAA
TCTGACTGTGTCTGCAGGTCCATCCAACACCACCTATGCAGCAGCACCAGCTTCCGGTGAGCCCACCACA
GCATCTCCTGGAGCAGCATCCTCAGCAGGCAACGGATGGACCTCAGGCATCACCCAGATCCTAGAAGGCT
CAGGCTCAGAATGGGACAGAACAGTTCCAACCACAGGTACCAGCAAAACTACATCTTCAGCCAATGGAAG
ACAAACCTTAAGAACAGCCAGGACAATGGTTCCGGGGACAGGCAGCAGAGAGGAGGGCTCTATCAGGGCA
GCAGTCCCCACTCCAGAGGGTCCGTCTCCAAAATCAAGAAGCATGTCCAGCACAACACAGGGTGTTTGGC
TGTGGAGCACCAGGAACTCAGTAACACCCAGTGTTACCACGAGTGAAGGAAGGAGGCAAGGCACAACCCC
AGAGACTGATGGGCCACGAGATGAAACAGACGTCAGGGTGTCTCCAGAAGCACCCAGGAAGACCACAGGA
ACCACGAGGCCATCGGCCCTGATCTCAGAACATGTGACCTGGGAAACTCTCCAAGACAAAACAGAGGTGT
CTAAGCAACAAATGCTGCACTCCCTGGAGGAGTTATCACCAGCTCCAAGTGCACAGACCTTAAATGCTAC
CTGTTTGGAAGTGGCATCCGAGGAAGGAAGGAGCATTGATGGGAGTCTTGAAAACACTACAGAAGAAAGC
AGCCCCCCAACACCAAGCCAGCTTTCAGTAGCAGGCCCTGTGTGGGTTTCTGTCAAGGGGCCATCCATGA
AGAGTGCTCTGATGGAAGGAGAAAGCCACACTCGGATCCTGACTCCAGTCTCCACTGTGCTGGCCCTGCT
TCTAATTGCTGCTCTGATCCTATTGAAAAGGAGCCTTGGCAGACAGAGGACATCTCAGAAGAAAGAAAGG
GTACCCAGGATCACTCTAATTCAGATGACACATTTCCTACCAGATAAGCTCCCTGATGAGGGAAAGAACT
TTCAACAGAGTAACCTTCTTCCTCCCCAAGCCAGCCTGACCGTCCTGGAGAATGACCCAAGACCCTGA

Translation (535 aa):
MDQGAPAKPSEQKVPSLRTRWEILLLTLCLLHGSSMTPPHRRSHSRWLQAGSPQFRTHLYNVEAHTAPTP
LCCWKNSLSGTNALRGPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPD
YRGRAALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGPSNTTYAAAPASGEPTT
ASPGAASSAGNGWTSGITQILEGSGSEWDRTVPTTGTSKTTSSANGRQTLRTARTMVPGTGSREEGSIRA
AVPTPEGPSPKSRSMSSTTQGVWLWSTRNSVTPSVTTSEGRRQGTTPETDGPRDETDVRVSPEAPRKTTG
TTRPSALISEHVTWETLQDKTEVSKQQMLHSLEELSPAPSAQTLNATCLEVASEEGRSIDGSLENTTEES
SPPTPSQLSVAGPVWVSVKGPSMKSALMEGESHTRILTPVSTVLALLLIAALILLKRSLGRQRTSQKKER
VPRITLIQMTHFLPDKLPDEGKNFQQSNLLPPQASLTVLENDPRP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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