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Report for CCDS15256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15256.1 Public Mus musculus 1 Cd55 23 108 98 CCDS HistoryNCBI Gene:13136Re-query CCDS DB by CCDS ID:15256.1Re-query CCDS DB by GeneID:13136See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027650.12 ENSMUSP00000027650.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027650.12Link to Ensembl Protein Viewer:ENSMUSP00000027650.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027650Re-query CCDS DB by Protein ID:ENSMUSP00000027650
Original member NCBI NM_010016.3 NP_034146.2 Updated not alive Link to Nucleotide Sequence:NM_010016.3Link to Protein Sequence:NP_034146.2Re-query CCDS DB by Nucleotide ID:NM_010016Re-query CCDS DB by Protein ID:NP_034146
NCBI NM_010016.4 NP_034146.2 Updated not alive Link to Nucleotide Sequence:NM_010016.4Link to Protein Sequence:NP_034146.2Re-query CCDS DB by Nucleotide ID:NM_010016Re-query CCDS DB by Protein ID:NP_034146
Current member NCBI NM_010016.5 NP_034146.2 Accepted alive Link to Nucleotide Sequence:NM_010016.5Link to Protein Sequence:NP_034146.2Re-query CCDS DB by Nucleotide ID:NM_010016Re-query CCDS DB by Protein ID:NP_034146Link to BLAST:NP_034146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034146.2 390 Q61475 390 100% 0 0

Chromosomal Locations for CCDS 15256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130440312 130440379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130447619 130447639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130448328 130448408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130449417 130449563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130452384 130452575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130456821 130456906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130458087 130458186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130459582 130459773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130461822 130462007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130462570 130462669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGATCCGTGGGCGGGCGCCTAGGACTCGGCCATCACCGCCGCCTCCGCTGCTGCCGTTGCTGTCGCTGT
CTCTGTTGCTGCTGTCCCCAACTGTACGCGGAGACTGCGGCCCACCTCCAGACATTCCTAATGCCAGGCC
AATCTTGGGCAGACACTCCAAGTTTGCTGAGCAAAGCAAAGTGGCATACTCGTGTAATAACGGCTTTAAA
CAAGTTCCAGACAAGTCAAACATAGTTGTCTGTCTTGAAAATGGCCAATGGTCGAGCCACGAAACATTCT
GTGAGAAATCATGTGTTGCTCCAGAAAGACTGAGTTTTGCATCCCTCAAAAAAGAGTACCTCAACATGAA
TTTTTTCCCAGTTGGTACTATTGTGGAATATGAGTGTCGGCCAGGATTTCGAAAACAACCTCCACTCCCA
GGAAAAGCAACTTGCCTTGAGGATTTAGTATGGTCTCCAGTTGCTCAGTTTTGTAAAAAAAAATCATGCC
CTAATCCTAAAGATCTGGATAATGGTCACATCAACATACCAACCGGCATATTATTCGGTTCAGAAATAAA
CTTCTCATGCAACCCAGGGTACAGGCTAGTCGGTGTCTCCTCTACTTTCTGTTCTGTCACAGGAAATACT
GTTGATTGGGACGATGAGTTTCCAGTGTGCACAGAAATACATTGTCCAGAGCCACCAAAAATCAACAATG
GAATAATGCGAGGGGAAAGTGACTCTTATACGTATAGCCAGGTGGTCACCTATTCATGTGACAAAGGCTT
CATCCTGGTTGGAAATGCTAGCATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCA
CCACCCCGGTGCATAGAGAAATCCAAGGTCCCAACGAAGAAACCAACAATTAATGTTCCAAGTACAGGAA
CCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAA
ACCTTCCACAGTTAAAGTTTCAGCAACCCAGCATGTACCTGTTACCAAGACAACAGTACGTCATCCAATA
AGAACATCTACAGACAAAGGAGAGCCTAACACAGGTGGTGACCGTTATATATATGGACATACATGTTTAA
TAACCTTGACAGTTTTGCATGTGATGCTATCACTCATTGGCTACTTGACATAG

Translation (390 aa):
MIRGRAPRTRPSPPPPLLPLLSLSLLLLSPTVRGDCGPPPDIPNARPILGRHSKFAEQSKVAYSCNNGFK
QVPDKSNIVVCLENGQWSSHETFCEKSCVAPERLSFASLKKEYLNMNFFPVGTIVEYECRPGFRKQPPLP
GKATCLEDLVWSPVAQFCKKKSCPNPKDLDNGHINIPTGILFGSEINFSCNPGYRLVGVSSTFCSVTGNT
VDWDDEFPVCTEIHCPEPPKINNGIMRGESDSYTYSQVVTYSCDKGFILVGNASIYCTVSKSDVGQWSSP
PPRCIEKSKVPTKKPTINVPSTGTPSTPQKPTTESVPNPGDQPTPQKPSTVKVSATQHVPVTKTTVRHPI
RTSTDKGEPNTGGDRYIYGHTCLITLTVLHVMLSLIGYLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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