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Report for CCDS15064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15064.1 Public Mus musculus 1 Zfand2b 23 108 98 CCDS HistoryNCBI Gene:68818Re-query CCDS DB by CCDS ID:15064.1Re-query CCDS DB by GeneID:68818See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027394.11 ENSMUSP00000027394.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027394.11Link to Ensembl Protein Viewer:ENSMUSP00000027394.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027394Re-query CCDS DB by Protein ID:ENSMUSP00000027394
Original member Current member EBI ENSMUST00000160439.7 ENSMUSP00000125086.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160439.7Link to Ensembl Protein Viewer:ENSMUSP00000125086.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160439Re-query CCDS DB by Protein ID:ENSMUSP00000125086
Original member Current member NCBI NM_001159905.1 NP_001153377.1 Accepted alive Link to Nucleotide Sequence:NM_001159905.1Link to Protein Sequence:NP_001153377.1Re-query CCDS DB by Nucleotide ID:NM_001159905Re-query CCDS DB by Protein ID:NP_001153377Link to BLAST:NP_001153377.1
Original member Current member NCBI NM_001159906.1 NP_001153378.1 Accepted alive Link to Nucleotide Sequence:NM_001159906.1Link to Protein Sequence:NP_001153378.1Re-query CCDS DB by Nucleotide ID:NM_001159906Re-query CCDS DB by Protein ID:NP_001153378Link to BLAST:NP_001153378.1
Original member Current member NCBI NM_026846.3 NP_081122.2 Accepted alive Link to Nucleotide Sequence:NM_026846.3Link to Protein Sequence:NP_081122.2Re-query CCDS DB by Nucleotide ID:NM_026846Re-query CCDS DB by Protein ID:NP_081122Link to BLAST:NP_081122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153377.1 257 Q91X58 257 100% 0 0
NP_001153378.1 257 Q91X58 257 100% 0 0
NP_081122.2 257 Q91X58 257 100% 0 0

Chromosomal Locations for CCDS 15064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75168852 75168906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75169185 75169279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75169500 75169631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75169765 75169916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75170367 75170459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75170539 75170599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75170686 75170753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75170976 75171048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75171236 75171280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGAGTTTCCGGACCTCGGGGCTCACTGTTCCGAGCCGAGCTGTCAGCGCTTGGATTTTTTGCCACTCA
AGTGCGATGCCTGCTCGGGCATCTTCTGCGCAGACCATGTGGCCTACGCCCAGCATCACTGTGGATCAGC
TTACCAAAAGGATATCCAGGTACCTGTGTGCCCTCTCTGTAATGTGCCTGTGCCGGTGGCCAGAGGAGAG
CCTCCTGACCGTGCTGTGGGAGAGCACATTGACAGAGACTGTCGTTCTGACCCAGCACAGCAAAAACGCA
AGATCTTCACCAATAAGTGTGAACGTTCTGGCTGCCGGCAGCGGGAGATGATGAAACTGACTTGTGATCG
CTGTGGCCGAAACTTCTGCATCAAGCACCGTCATCCCCTGGACCATGAATGCTCTGGGGAAGGTCATCAG
ACCAGCAGGGCAGGGCTTGCTGCTATTTCTAGAGCACAAGGTCTGGCTTCTACAAGCACCGCCCCCAGTC
CAAGCCGGACCTTGCCTTCATCATCCTCCCCAAGCAGAGCTACACCCCAGCTTCCAACCAGGACAGCCTC
TCCTGTTATTGCTTTGCAGAATGGCTTGAGTGAGGATGAGGCCCTGCAGCGTGCCCTGGAACTGTCCCTT
GCGGAGGCTAAACCCCAGGTTCTAAGTTCTCAGGAGGAAGACGACTTGGCGTTAGCACAGGCACTGTCAG
CCAGTGAGGCAGAATACCAACAGCAGCAGGCGCAGAGTCGTAGCTTGAAGCCGTCCAACTGCAGCCTGTG
CTAG

Translation (257 aa):
MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCNVPVPVARGE
PPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHECSGEGHQ
TSRAGLAAISRAQGLASTSTAPSPSRTLPSSSSPSRATPQLPTRTASPVIALQNGLSEDEALQRALELSL
AEAKPQVLSSQEEDDLALAQALSASEAEYQQQQAQSRSLKPSNCSLC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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