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Report for CCDS15053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15053.1 Public Mus musculus 1 Ttll4 23 108 98 CCDS HistoryNCBI Gene:67534Re-query CCDS DB by CCDS ID:15053.1Re-query CCDS DB by GeneID:67534See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042125.14 ENSMUSP00000037406.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042125.14Link to Ensembl Protein Viewer:ENSMUSP00000037406.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042125Re-query CCDS DB by Protein ID:ENSMUSP00000037406
Original member Current member NCBI NM_001014974.2 NP_001014974.1 Accepted alive Link to Nucleotide Sequence:NM_001014974.2Link to Protein Sequence:NP_001014974.1Re-query CCDS DB by Nucleotide ID:NM_001014974Re-query CCDS DB by Protein ID:NP_001014974Link to BLAST:NP_001014974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014974.1 1193 Q80UG8 1193 100% 0 0

Chromosomal Locations for CCDS 15053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74678992 74680463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74681300 74681409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74681759 74681822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74685319 74685443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74685860 74685970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74686317 74686393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74687204 74687395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74687478 74687560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74687723 74687851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74688164 74688286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74688567 74688665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74689323 74689457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74689960 74690106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74695708 74695810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74696405 74696615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74696742 74696812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74697179 74697249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74697441 74697699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3582 nt):
ATGGCCTCAGCAGGAACAGAGCACTACAGTATTGGCCTGCGCCGAGGAAACAGCTTCAAGCAGAGACATC
CCTCAGGCACAGTGTCTGCTTCACCATCTGAGAAACCCTCGGAGGTCAAAGTCTGGTCTCAGGCCCATCA
GCAGGTGAAGCCAATCTGGAAACTGGAAAAGAAGCACGTAGGCACACTGTCAGCAGGGCTGGGCACCAGT
TTCTTGGGAGTCCCATCCCAGCCAGCCTATTTCCTTTGCCCTAGCACTTTATGTAGCTCTGGGACCACAG
CAGTCATTGCAGGCCACAGCAACCCCTGTTACCTGCAGTCCCTCCCTAACTTGTTCAGCAATACTCTGCT
GTACCGCCGCACCAACGTGAGGCAAAAACCATACCAGCAACTGGAATCTTTCTGCTTGCGTTCCAGCCCT
TCAGAGAAAAGATCTTTTTCTCTCCCTCAGAAGGGTCTTCCTGTCAGTGTCACTGCCAATAAAGCCACAT
CTTCTACAGTCTTCCCCATGGCCCAGCCCATGGCAACTTCACCCACTGATCCATACCTCTCACTGGCAGC
AGCTGGGGAGAACCCTTCAAGGAAGAGCCTGGCCTCTGCTATCTCAGGGAAGATTGCATCTCCACTGTCC
TATAAGCCCATGCTGAACAACAACTCCTTCATGAGGCCAAATAGCACTAAAGTGCCCTTATCACAAGCCA
CAGATGGCCTGAAGCCAGTATCCTCACCCAAGATCCAGCCTGTCTCATGGCATCATTCAGGGGGTACTGG
GGACTGTGTACCCCAACCTGGTGACCATAAGGTGCCCCAAAACATTGCTACTGTCTTAGATGATGTCACT
GCCCCTATCACCCCATCTATCCCTAGCACCCTCAACATATCCACAGCCAGTGTTACCTCTTCCCAGTGCA
GTCAGAGTAACTTTAGGATGGAGGCACATCCCTGTGGCCTGGATGAAAACCCGGATTCCCAGAGTGCTAC
TAAAGAGGTACACTTCACTGAGGCTGTGAGGAAGTTGGCTGAAAAAGGCTTGGAGAAGATGCCACGACAA
GGCTACCAGTTTGAACAGGCTTGTTTTGTGAACCCCAGCTTCCAGTGGGGTCTTCTCAACAGAAGCAGGC
GGTGGAAACCTCTGATGGGCCAGCGGTTTCCTCAGGAGGATATTGGATTAGACAGTGCGATCCTTCCTGG
TACTTCAGACACCTTGGGGTTGGACAGCACAGTCTTCTGTACCAAGAGGATCAGCATTCACCTCCTTGCC
TCACATGTCCATGGGCTCAATCCCAGCCCTGCCTGTGGGTCTGCAGTTGACCCCCAGGTACTTGGAGAAG
ACAGAGCTCCTGTTCCCCCTTCTTCCCTCCAGCCTCTTGGTGTAGCTGAAGTGGCCACTCGTCTTTCTTC
TGTCCATCTTGACCAGCCTGGGAAGGAGCCTGAGGAAGCCAAGGACCTGAACTCTTGTACTAAGGGTGGT
GGTTCAGCTACTGACCTCCAGCCAAACCAGGTGGAGCCTGAAGATACAGAAGATGAACTGGGAGATGGTT
TGGAAGATAGCTGCAGCCATGATGAGAATGAAGAAGAGGAAGGAGACTCAGAGTGCTCTTCTTTAAGTGT
TGTCTCCCCCAGCGAGTCAGTGGCATTAATATCTCGGAACTGTGTGGATTTGATGTCCAAATCCCTTCCC
AATCATGAGAAAGTTGTACGGCCAGCCCTCATCTACAGTCTCTTCCCCAATGTAACCCCTACCATCTATT
TTGGGACTCGGGATGAAAGAGTGGAGAAACTTCCTTGGGAACAGAGGAGGCTGCTTCGGTGGAAGATGAG
CACAGTGACCCCCAACATTGTCAAGCAGACCATCGGTCGGTCACACTTCAAAATCAGCAAGAGAAATGAT
GACTGGCTGGGCTGCTGGGGTCACCACATGAAGTCTCCTGGTTTTCGATCCATTAGAGAGCATCAGAAGC
TAAACCACTTCCCAGGCTCCTTCCAGATTGGGAGGAAGGACCGGCTGTGGCGGAACCTGTCTCGCATGCA
AAGCCGTTTTGGCAAGAAGGAGTTCAGTTTCTTTCCTCAGTCCTTTATCCTGCCCCAGGATTCCAAGCTC
TTGCGCAAAGCCTGGGAGAGCAGCAGCCGCCAGAAGTGGATTGTGAAGCCACCAGCATCTGCTCGAGGCA
TTGGCATTCAGGTCATTCACAAATGGAGTCAGCTCCCCAAGCGCAGGCCCCTCCTGGTACAGAGGTATCT
ACACAAGCCCTACCTCATTAGTGGCAGCAAATTTGATCTTCGGATCTATGTTTACGTGACTTCTTATGAT
CCTCTACGGATTTACCTCTTTTCGGATGGACTCGTCCGTTTTGCCAGTTGCAAGTATTCCCCTTCCATGA
AGAGTCTTAGCAACAAGTTCATGCACCTGACCAACTACAGTGTCAATAAAAAGAACACAGAATACCAGGC
TAATGCTGATGAGACTGCATGCCAAGGGCACAAATGGGCATTGAAAGCTTTGTGGAACTATCTGAGCCAG
AAAGGAATTAATAGTGATGCCATCTGGGAGAAGATAAAGGATGTTGTAGTCAAAACCATCATCTCGTCAG
AGCCCTATGTGACTAACCTACTGAAGTTATATGTGCGGCGCCCCTATAGCTGTCATGAGCTCTTTGGTTT
TGACATCATGCTGGATGAGAACCTGAAACCCTGGGTCCTAGAAGTCAACATTTCTCCAAGCCTCCATTCC
AACTCTCCTCTGGACATCAGCATCAAAGGCCAGATGATCCGAGACCTTCTGAACCTGGCTGGCTTTGTTC
TGCCCAACATGGAGGATATCATCTCTAGTTCCAGCAGCCCCAGCAGCTCCAGCGGCTCCAGCACCAGCTT
GCCAAGCTCTCCTAGAGACAAATGTCAAATGACTCCAGAGCACTTCACTGCACAGAAGATGAAGAAAGCC
TATTACTTGACCCAGAAAATTCCTGACCAGGACTTCTATGCGTCCGTGCTGGACGTCTTGACACCAGATG
ATGTTCGGGTTTTGGTGGAGATGGAAGATGAGTTTTCTCGTCGTGGTCAATTTGAAAGAATTTTTCCTTC
CCGAATCTCTTCTCGATATCTTCGGTTTTTTGAGCAGCCACGATATTTCAACATTCTCACCACCCAGTGG
GAACAGAAGTACCATGGAAACAAGCTCAAAGGAGTAGATCTGCTTCGGAATTGGTGCTACAAAGGCTTCC
ACACGGGGATTGTCTCTGACTCAGCCCCACTGTGGTCTCTGCCAACATCGCTCATGACTACCTCAAAGGG
TGATGGGACACCAAATTCCGCCAGCAAGTCACGAAAGAAGAGCGCCTCTGAGGGAACCACACTGTCCTCT
GAAGACAGGTCAACACCCAAGTCTAAGAAGAGTCAAGCTGGCCTGTCTCCCATATCCAGGAAGACTTTGT
CCTCAAGGAGCAATGAGAACACCAGCAAACAGTCCAAGCGCTCTACCCCGGGGTTACCTGTCCTCAAGTA
CTCTGGGCAGAGTTCCAGACTTTCTGCTGCTTCTGCTTCCCAGTCAGTCACTGACTCCCGCTTGACTGCT
GTGAGCTCGTGA

Translation (1193 aa):
MASAGTEHYSIGLRRGNSFKQRHPSGTVSASPSEKPSEVKVWSQAHQQVKPIWKLEKKHVGTLSAGLGTS
FLGVPSQPAYFLCPSTLCSSGTTAVIAGHSNPCYLQSLPNLFSNTLLYRRTNVRQKPYQQLESFCLRSSP
SEKRSFSLPQKGLPVSVTANKATSSTVFPMAQPMATSPTDPYLSLAAAGENPSRKSLASAISGKIASPLS
YKPMLNNNSFMRPNSTKVPLSQATDGLKPVSSPKIQPVSWHHSGGTGDCVPQPGDHKVPQNIATVLDDVT
APITPSIPSTLNISTASVTSSQCSQSNFRMEAHPCGLDENPDSQSATKEVHFTEAVRKLAEKGLEKMPRQ
GYQFEQACFVNPSFQWGLLNRSRRWKPLMGQRFPQEDIGLDSAILPGTSDTLGLDSTVFCTKRISIHLLA
SHVHGLNPSPACGSAVDPQVLGEDRAPVPPSSLQPLGVAEVATRLSSVHLDQPGKEPEEAKDLNSCTKGG
GSATDLQPNQVEPEDTEDELGDGLEDSCSHDENEEEEGDSECSSLSVVSPSESVALISRNCVDLMSKSLP
NHEKVVRPALIYSLFPNVTPTIYFGTRDERVEKLPWEQRRLLRWKMSTVTPNIVKQTIGRSHFKISKRND
DWLGCWGHHMKSPGFRSIREHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEFSFFPQSFILPQDSKL
LRKAWESSSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYD
PLRIYLFSDGLVRFASCKYSPSMKSLSNKFMHLTNYSVNKKNTEYQANADETACQGHKWALKALWNYLSQ
KGINSDAIWEKIKDVVVKTIISSEPYVTNLLKLYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHS
NSPLDISIKGQMIRDLLNLAGFVLPNMEDIISSSSSPSSSSGSSTSLPSSPRDKCQMTPEHFTAQKMKKA
YYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISSRYLRFFEQPRYFNILTTQW
EQKYHGNKLKGVDLLRNWCYKGFHTGIVSDSAPLWSLPTSLMTTSKGDGTPNSASKSRKKSASEGTTLSS
EDRSTPKSKKSQAGLSPISRKTLSSRSNENTSKQSKRSTPGLPVLKYSGQSSRLSAASASQSVTDSRLTA
VSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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