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Report for CCDS14990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14990.1 Public Mus musculus 1 Cyp20a1 23 108 98 CCDS HistoryNCBI Gene:77951Re-query CCDS DB by CCDS ID:14990.1Re-query CCDS DB by GeneID:77951See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060608.12 ENSMUSP00000050823.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060608.12Link to Ensembl Protein Viewer:ENSMUSP00000050823.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060608Re-query CCDS DB by Protein ID:ENSMUSP00000050823
Original member Current member NCBI NM_030013.3 NP_084289.1 Accepted alive Link to Nucleotide Sequence:NM_030013.3Link to Protein Sequence:NP_084289.1Re-query CCDS DB by Nucleotide ID:NM_030013Re-query CCDS DB by Protein ID:NP_084289Link to BLAST:NP_084289.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084289.1 462 Q8BKE6 462 100% 0 0

Chromosomal Locations for CCDS 14990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 60343386 60343457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60352121 60352170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60352909 60353075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60354514 60354656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60363190 60363357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60366649 60366727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60371221 60371336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60372590 60372644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60376067 60376187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60379374 60379485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60382404 60382468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60386905 60386994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 60387139 60387289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGCTGGACTTCGCCATCTTCGCCGTGACGTTCCTGCTGGCGCTGGTGGGAGCGGTGCTGTACCTCTACC
CGGCTTCCCGGCAAGCTTCAGGAATTCCAGGGCTTACTCCAACTGAAGAAAAAGATGGTAATCTTCCAGA
CATTGTAAACAGTGGAAGTTTGCATGAGTTCCTGGTTAATTTGCATGAAAGATACGGGCCTGTGGTCTCT
TTCTGGTTTGGCAGGCGTCTTGTGGTTAGCTTGGGCACCACTGATGTACTGAAGCAACATTTCAACCCCA
ATAAGACTTCGGACCCATTTGAAACCATGTTGAAGTCATTATTAGGGTATCAGTCTGGCGGAGGGAGTGC
GGGTGAGGACCACGTGAGGAGGAAACTGTATGGAGATGCCGTGACAGCTTCTCTGCATAGTAACTTCCCT
CTCCTGCTACAGCTTTCAGAAGAATTGTTAGATAAATGGCTGTCCTATCCAGAGACCCAGCACATACCTC
TGAGCCAGCATATGCTCGGTTTTGCTTTGAAGTTTGTCACAAGGATGGTACTGGGTAGCACCTTTGAAGA
TGAACAGGAGGTCATCCGATTCCAAAAGATTCATGGCACAGTGTGGTCTGAGATTGGAAAAGGCTTTCTA
GATGGGTCACTCGATAAAAACACCACTCGGAAAAAACAGTATCAAGAGGCTCTCATGCAATTGGAATCCA
CTTTAAAGAAAATCATAAAGGAACGAAAAGGAGGGAACTTCAGGCAACACACCTTCATCGACTCCTTAAC
ACAGGGAAAACTTAATGAGCAACAGATCCTAGAGGACTGTGTGGTGTTCTCTCTGGCCAGCTGCATAATA
ACTGCAAGGTTGTGTACCTGGACGATCCATTTCCTTACGACGACTGGAGAAGTTCAGAAGAAGCTATGCA
AGGAGATAGACCAAGTTTTAGGGGAGGGTCCTATCACTTCAGAGAAAATTGAGCAGCTCAGTTATTGTCA
GCAAGTACTTTTTGAAACTGTTCGGACTGCTAAACTAACTCCAGTTTCTGCCCGGCTTCAAGACATTGAA
GGAAAAGTCGGCCCATTTGTTATTCCTAAGGAGACACTCGTCCTTTATGCCCTTGGCGTGGTTCTTCAGG
ACCCCAGCACTTGGCCATTACCACACAGGTTTGATCCAGACCGCTTTGCTGACGAGCCAGTGATGAAAGT
GTTTTCTTCTCTTGGCTTCTCAGGCACATGGGAATGTCCAGAACTGAGGTTTGCTTACATGGTGACCGCA
GTGCTTGTGAGTGTGTTGCTGAAGAGGCTGCGCCTGCTCGCTGTGGACAGACAAGTTTTTGAAATGAAGT
ATGAACTGGTCACATCAGCAAGGGAAGAAGCTTGGATCACTGTCTCCAAAAGACACTAA

Translation (462 aa):
MLDFAIFAVTFLLALVGAVLYLYPASRQASGIPGLTPTEEKDGNLPDIVNSGSLHEFLVNLHERYGPVVS
FWFGRRLVVSLGTTDVLKQHFNPNKTSDPFETMLKSLLGYQSGGGSAGEDHVRRKLYGDAVTASLHSNFP
LLLQLSEELLDKWLSYPETQHIPLSQHMLGFALKFVTRMVLGSTFEDEQEVIRFQKIHGTVWSEIGKGFL
DGSLDKNTTRKKQYQEALMQLESTLKKIIKERKGGNFRQHTFIDSLTQGKLNEQQILEDCVVFSLASCII
TARLCTWTIHFLTTTGEVQKKLCKEIDQVLGEGPITSEKIEQLSYCQQVLFETVRTAKLTPVSARLQDIE
GKVGPFVIPKETLVLYALGVVLQDPSTWPLPHRFDPDRFADEPVMKVFSSLGFSGTWECPELRFAYMVTA
VLVSVLLKRLRLLAVDRQVFEMKYELVTSAREEAWITVSKRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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