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Report for CCDS14971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14971.1 Public Mus musculus 1 Bzw1 23 108 98 CCDS HistoryNCBI Gene:66882Re-query CCDS DB by CCDS ID:14971.1Re-query CCDS DB by GeneID:66882See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050552.14 ENSMUSP00000051935.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050552.14Link to Ensembl Protein Viewer:ENSMUSP00000051935.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050552Re-query CCDS DB by Protein ID:ENSMUSP00000051935
Original member Current member NCBI NM_025824.4 NP_080100.1 Accepted alive Link to Nucleotide Sequence:NM_025824.4Link to Protein Sequence:NP_080100.1Re-query CCDS DB by Nucleotide ID:NM_025824Re-query CCDS DB by Protein ID:NP_080100Link to BLAST:NP_080100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080100.1 419 Q9CQC6 419 100% 0 0

Chromosomal Locations for CCDS 14971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58394212 58394275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58397676 58397852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58399004 58399098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58400079 58400144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58400707 58400842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58401114 58401223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58401341 58401511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58402887 58403033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58403615 58403753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58404232 58404354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58405035 58405066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAATAATCAAAAGCAGCAAAAACCAACGCTATCAGGCCAGCGTTTTAAAACCAGAAAAAGAGATGAAA
AAGAGAGGTTTGACCCTACTCAGTTTCAAGACTGTATTATTCAAGGCTTAACTGAAACTGGTACTGATTT
GGAAGCAGTAGCTAAGTTTCTTGATGCTTCTGGAGCAAAACTTGACTACCGCCGCTATGCAGAAACACTC
TTTGACATTCTGGTGGCTGGCGGAATGCTGGCCCCGGGTGGTACACTGGCAGATGACATGATGCGCACAG
ATGTCTGTGTGTTCGCAGCACAAGAAGACCTAGAGACCATGCAAGCATTCGCTCAGGTTTTTAACAAGCT
AATCAGGCGCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTTAAAAAGTTACTGCTCTTCCTAAAG
GGGTTTTCAGAGTCGGAGAGGAACAAGCTTGCCATGTTGACTGGTGTCCTTCTGGCTAATGGAACCCTTA
ATGCATCCATTCTTAACAGCCTTTATAATGAGAATTTGGTTAAAGAAGGGGTTTCAGCAGCTTTTGCTGT
AAAGCTCTTTAAATCATGGATAAATGAAAAAGACATCAATGCAGTTGCTGCGAGTCTTCGGAAAGTCAGC
ATGGACAACAGACTGATGGAGCTGTTCCCTGCCAATAAACAAAGTGTTGAGCATTTCACTAAGTATTTCA
CTGAGGCGGGCTTGAAGGAGCTTTCAGAGTATGTCCGTAACCAGCAGACCATTGGGGCACGGAAGGAGCT
CCAAAAGGAGCTGCAGGAGCAGATGTCCCGTGGGGACCCATTCAAGGACATAATTTTATATGTCAAGGAG
GAGATGAAAAAAAATAACATTCCAGAACCAGTGGTCATTGGGATAGTCTGGTCCAGTGTGATGAGCACCG
TGGAGTGGAACAAAAAAGAGGAGCTTGTAGCAGAGCAAGCCATCAAGCACTTGAAGCAATACAGCCCTCT
CCTTGCTGCCTTCACTACTCAAGGTCAGTCTGAGCTGACCCTGCTACTGAAGATCCAGGAGTATTGCTAT
GACAACATTCACTTCATGAAGGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAGCTGAGGTCCTGAGTG
AAGAGCCCATTCTGAAGTGGTATAAAGACGCACATGTTGCAAAGGGCAAAAGTGTCTTCCTTGAGCAAAT
GAAGAAGTTTGTAGAATGGCTCAAAAATGCTGAGGAGGAATCTGAGTCTGAAGCTGAAGAAGGTGACTGA

Translation (419 aa):
MNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYRRYAETL
FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLK
GFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVS
MDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKE
EMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFTTQGQSELTLLLKIQEYCY
DNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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