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Report for CCDS14939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14939.1 Public Mus musculus 1 Tmeff2 23 108 98 CCDS HistoryNCBI Gene:56363Re-query CCDS DB by CCDS ID:14939.1Re-query CCDS DB by GeneID:56363See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081851.3 ENSMUSP00000080533.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081851.3Link to Ensembl Protein Viewer:ENSMUSP00000080533.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081851Re-query CCDS DB by Protein ID:ENSMUSP00000080533
Original member Current member NCBI NM_019790.4 NP_062764.1 Accepted alive Link to Nucleotide Sequence:NM_019790.4Link to Protein Sequence:NP_062764.1Re-query CCDS DB by Nucleotide ID:NM_019790Re-query CCDS DB by Protein ID:NP_062764Link to BLAST:NP_062764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062764.1 374 Q9QYM9-1 374 100% 0 0

Chromosomal Locations for CCDS 14939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 50927948 50928119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 50930549 50930658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 50938213 50938342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 50943197 50943223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51071468 51071564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51132143 51132291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51133059 51133118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51180252 51180375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51181737 51181895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51185385 51185481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGTGCTGTGGGAGTCCCCGCGGCAGTGCAGCAGCTGGACACTTTGCGAGGGCTTCTGCTGGCTGCTGC
TGCTGCCCGTGACGCTGCTTATCATAGCCCGCCCGGTAAAACTCGCTGCTTTCCCTACCTCCTTAAGTGA
CTGCCAAACGCCCACCGGCTGGAACTGCTCCGGTTACGATGACAGAGAAAATGATCTCTTCCTGTGTGAC
ACCAACACCTGTAAATTTGACGGGGAATGTTTAAGGATTGGAGACACTGTGACTTGCGTCTGTCAGTTCA
AGTGTAACAGTGACTACGTGCCTGTGTGTGGCTCCAATGGAGAGAGCTACCAGAATGAGTGCTACCTGAG
GCAAGCTGCCTGCAAACAGCAGAGTGAGATACTTGTGGTCTCAGAAGGATCCTGTGCTACAGATACAGGA
TCGGGATCTGGAGATGGAGTCCATGAAGGCTCTGGCGAGACCAGTCAGAAGGAGACATCCACCTGTGACA
TTTGCCAGTTTGGGGCAGAGTGTGATGAAGATGCTGAGGATGTCTGGTGTGTGTGCAACATAGACTGTTC
TCAAACCAACTTCAATCCCCTCTGTGCTTCTGATGGGAAATCTTATGATAATGCATGTCAAATCAAAGAA
GCGTCATGTCAGAAACAGGAGAAAATTGAAGTCATGTCTCTGGGTCGATGTCAAGATAACACAACTACAA
CCACTAAATCTGAAGATGGGCATTATGCAAGAACAGATTATGCAGAGAATGCTAACAAATTAGAAGAAAG
TGCCAGAGAACACCACATACCTTGCCCAGAACATTATAATGGTTTCTGCATGCATGGGAAGTGTGAACAC
TCCATCAATATGCAGGAGCCATCTTGCAGATGCGATGCTGGTTACACTGGTCAACACTGTGAAAAGAAGG
ACTACAGTGTTCTCTACGTTGTTCCTGGCCCTGTCCGGTTCCAGTACGTCTTGATTGCAGCTGTGATTGG
AACAATTCAGATTGCTGTCATCTGCGTGGTGGTCCTCTGCATCACAAGGAAATGCCCCAGAAGCAACAGA
ATTCACAGACAGAAGCAAAATACAGGGCACTACAGTTCAGACAACACAACAAGAGCATCCACACGGTTAA
TCTAG

Translation (374 aa):
MVLWESPRQCSSWTLCEGFCWLLLLPVTLLIIARPVKLAAFPTSLSDCQTPTGWNCSGYDDRENDLFLCD
TNTCKFDGECLRIGDTVTCVCQFKCNSDYVPVCGSNGESYQNECYLRQAACKQQSEILVVSEGSCATDTG
SGSGDGVHEGSGETSQKETSTCDICQFGAECDEDAEDVWCVCNIDCSQTNFNPLCASDGKSYDNACQIKE
ASCQKQEKIEVMSLGRCQDNTTTTTKSEDGHYARTDYAENANKLEESAREHHIPCPEHYNGFCMHGKCEH
SINMQEPSCRCDAGYTGQHCEKKDYSVLYVVPGPVRFQYVLIAAVIGTIQIAVICVVVLCITRKCPRSNR
IHRQKQNTGHYSSDNTTRASTRLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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