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Report for CCDS14244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14244.1 Public Homo sapiens X SYTL5 24 110 108 CCDS HistoryNCBI Gene:94122Re-query CCDS DB by CCDS ID:14244.1Re-query CCDS DB by GeneID:94122See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14244.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297875.7 ENSP00000297875.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297875.7Link to Ensembl Protein Viewer:ENSP00000297875.2Re-query CCDS DB by Nucleotide ID:ENST00000297875Re-query CCDS DB by Protein ID:ENSP00000297875
Original member Current member NCBI NM_001163335.2 NP_001156807.1 Accepted alive Link to Nucleotide Sequence:NM_001163335.2Link to Protein Sequence:NP_001156807.1Re-query CCDS DB by Nucleotide ID:NM_001163335Re-query CCDS DB by Protein ID:NP_001156807Link to BLAST:NP_001156807.1
Original member Current member NCBI NM_138780.3 NP_620135.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138780.3Link to Protein Sequence:NP_620135.1Re-query CCDS DB by Nucleotide ID:NM_138780Re-query CCDS DB by Protein ID:NP_620135Link to BLAST:NP_620135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156807.1 730 Q8TDW5-1 730 100% 0 0
NP_620135.1 730 Q8TDW5-1 730 100% 0 0

Chromosomal Locations for CCDS 14244.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38033890 38034008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38054213 38054422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38072047 38072162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38073590 38073698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38076567 38076701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38089446 38089587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38094295 38094424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38096134 38096234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38102342 38102434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38106593 38106771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38108600 38108699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38110321 38110482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38120358 38120466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38122080 38122215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38125298 38125506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38126588 38126730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGTCTAAGAACTCAGAGTTCATCAATCTGTCATTTTTATTAGATCATGAGAAGGAAATGATCCTGGGCG
TCCTAAAGAGAGATGAATATTTGAAAAAAGTGGAGGACAAGAGAATAAGGAAGCTGAAAAATGAACTCTT
AGAAGCAAAACGTAGAAGTGGGAAAACTCAACAAGAGGCCAGCAGAGTTTGTGTTCACTGTCACAGAAAC
CTGGGCCTAATCTTTGACCGGGGAGACCCTTGTCAGGCTTGCTCACTGAGGGTATGCAGGGAGTGTCGAG
TTGCAGGCCCCAATGGCAGCTGGAAGTGCACTGTCTGTGACAAAATCGCGCAGCTAAGGATTATAACTGG
TGAGTGGTTTTTTGAAGAAAAGGCAAAACGTTTCAAGCAAGTCAATGTTCTCGGCACTGATGTTGTCCGA
CAGTCCATTTTAAGAAGAAGTCCAGGAGCTGAAGAAGTACAGAGCCAAGAGCAAACCCGCCAGGATGCAG
AAAAGTCAGACACTTCACCTGTTGCTGGGAAGAAGGCCAGCCATGATGGGCCCAAGAGAAAGGGATTTCT
TCTTAGCAAGTTCAGATCGGCAACCAGAGGAGAAATCATAACTCCCAAAACTGACACTGGGCGGAGCTAT
AGCTTGGACTTAGACGGTCAACATTTTCGGAGTTTAAAATCACCTCCTGGTTCAGACAGGGGAAGCACTG
GCTCATCAGATCTCAATGACCAGGAACCTGGTCCTAGGACCCCGAAGAGCAGTCGGAGCAATGGTGTGAC
CCCAGGCACTCAGAGTTCACCAGCCCCAAGCACACGAACTGTGACCTCAGTCATCAGTAGAGAGTATGGT
TTTGAAAATTCCATGGATTTGGCTGCTATTGAAGGTACCTCTCAGGAGCTCACAAAGAGTCACCGCAGAA
ACACTTCTGGCACACCTTCCATAGCAGTGTCTGGAACCTCTCTCTCCTCAGATCAGAGTCGATCTGAGTT
AGATTTGAGTGAGTCATTTACAGAAGACTCAGAGGATACTGTAAGCATAAGAAGCAAGTCTGTCCCTGGG
GCTTTAGACAAGGACTCCTTGGAAGAGACTGAAGAAAGCATTGATGCCTTAGTGTCCTCGCAGTTATCTA
CAAACACTCACCGTCTGGCAAGTGGCCTATCAACTACCAGCCTTAACAGCATGATGAGCGTTTACAGTGA
AACGGGAGACTATGGCAACGTGAAAGTCAGTGGTGAAATCCTTCTCCATATCAGCTACTGCTACAAAACT
GGTGGGCTGTACATTTTTGTCAAGAATTGCAGAAATCTGGCCATAGGAGATGAAAAGAAACAGAGGACAG
ATGCTTATGTCAAGTCATATCTTCTTCCTGACAAGTCCCGGAACAACAAGCGTAAGACCAAAATCAGAAC
AGGCACCAATCCAGAATTCAATGAAACACTAAAGTACACTATCAGCCATACCCAGCTGGAAACAAGAACT
CTGCAGCTCTCAGTCTGGCACTATGATCGATTTGGACGTAATAGCTTCCTCGGGGAAGTAGAGATTCCTT
TTGACTCATGGAACTTTGAAAATCCAACTGATGAGTGGTTTGTGCTTCAACCCAAGGTGGAGTTTGCTCC
TGATATTGGCCTTCAATACAAAGGAGAGCTGACAGTTGTTTTACGTTACATTCCCCCAGAAGAGAACCTG
ATGCTTCCACCAGAACAACTCCAAGGAAATAAGACTTTTAAAAAGGGAAAGAAGAAGGAGTCACCTGTAA
TCTCTGGAGGAATACTAGAAGTGTTCATCAAAGAGGCAAAGAATTTGACAGCAGTGAAGTCAGGAGGCAC
TTCTGATAGCTTTGTGAAGGGCTACCTGCTCCCTGATGATAGCAAAGCCACCAAGCACAAAACTCTGGTA
ATAAAAAAGAGTGTTAACCCTCAGTGGAATCATACATTCATGTTCAGTGGCATCCATCCCCAGGATATAA
AGAATGTTTGCCTAGAACTTACTATCTGGGACAAGGAGGCCTTTTCCAGCAACATCTTTCTGGGAGGAGT
TCGTTTGAATTCTGGAAGTGGTGTGAGCCATGGGAAGAACGTGGATTGGATGGACTCTCAGGGGGAAGAG
CAGCGCCTTTGGCAGAAGATGGCCAACAACCCTGGAACTCCCTTTGAGGGTGTACTCATGCTTCGTTCCA
GCATGGGAAAATGTAGGCTCTAA

Translation (730 aa):
MSKNSEFINLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNELLEAKRRSGKTQQEASRVCVHCHRN
LGLIFDRGDPCQACSLRVCRECRVAGPNGSWKCTVCDKIAQLRIITGEWFFEEKAKRFKQVNVLGTDVVR
QSILRRSPGAEEVQSQEQTRQDAEKSDTSPVAGKKASHDGPKRKGFLLSKFRSATRGEIITPKTDTGRSY
SLDLDGQHFRSLKSPPGSDRGSTGSSDLNDQEPGPRTPKSSRSNGVTPGTQSSPAPSTRTVTSVISREYG
FENSMDLAAIEGTSQELTKSHRRNTSGTPSIAVSGTSLSSDQSRSELDLSESFTEDSEDTVSIRSKSVPG
ALDKDSLEETEESIDALVSSQLSTNTHRLASGLSTTSLNSMMSVYSETGDYGNVKVSGEILLHISYCYKT
GGLYIFVKNCRNLAIGDEKKQRTDAYVKSYLLPDKSRNNKRKTKIRTGTNPEFNETLKYTISHTQLETRT
LQLSVWHYDRFGRNSFLGEVEIPFDSWNFENPTDEWFVLQPKVEFAPDIGLQYKGELTVVLRYIPPEENL
MLPPEQLQGNKTFKKGKKKESPVISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTLV
IKKSVNPQWNHTFMFSGIHPQDIKNVCLELTIWDKEAFSSNIFLGGVRLNSGSGVSHGKNVDWMDSQGEE
QRLWQKMANNPGTPFEGVLMLRSSMGKCRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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