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Report for CCDS13675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13675.1 Public Homo sapiens 21 RIPK4 24 110 108 CCDS HistoryNCBI Gene:54101Re-query CCDS DB by CCDS ID:13675.1Re-query CCDS DB by GeneID:54101See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332512.8 ENSP00000332454.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332512.8Link to Ensembl Protein Viewer:ENSP00000332454.3Re-query CCDS DB by Nucleotide ID:ENST00000332512Re-query CCDS DB by Protein ID:ENSP00000332454
Original member Current member NCBI NM_020639.3 NP_065690.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020639.3Link to Protein Sequence:NP_065690.2Re-query CCDS DB by Nucleotide ID:NM_020639Re-query CCDS DB by Protein ID:NP_065690Link to BLAST:NP_065690.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065690.2 784 P57078-2 784 100% 0 0

Chromosomal Locations for CCDS 13675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41740838 41741997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41743882 41744140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41745759 41745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41746613 41746771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41749154 41749203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41751097 41751245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41756525 41756816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41766860 41767041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGAGGGCGACGGCGGGACCCCATGGGCCCTGGCGCTGCTGCGCACCTTCGACGCGGGCGAGTTCACGG
GCTGGGAGAAGGTGGGCTCGGGCGGCTTCGGGCAGGTGTACAAGGTGCGCCATGTCCACTGGAAGACCTG
GCTGGCCATCAAGTGCTCGCCCAGCCTGCACGTCGACGACAGGGAGCGCATGGAGCTTTTGGAAGAAGCC
AAGAAGATGGAGATGGCCAAGTTTCGCTACATCCTGCCTGTGTATGGCATCTGCCGCGAACCTGTCGGCC
TGGTCATGGAGTACATGGAGACGGGCTCCCTGGAAAAGCTGCTGGCTTCGGAGCCATTGCCATGGGATCT
CCGGTTCCGAATCATCCACGAGACGGCGGTGGGCATGAACTTCCTGCACTGCATGGCCCCGCCACTCCTG
CACCTGGACCTCAAGCCCGCGAACATCCTGCTGGATGCCCACTACCACGTCAAGATTTCTGATTTTGGTC
TGGCCAAGTGCAACGGGCTGTCCCACTCGCATGACCTCAGCATGGATGGCCTGTTTGGCACAATCGCCTA
CCTCCCTCCAGAGCGCATCAGGGAGAAGAGCCGGCTCTTCGACACCAAGCACGATGTATACAGCTTTGCG
ATCGTCATCTGGGGCGTGCTCACACAGAAGAAGCCGTTTGCAGATGAGAAGAACATCCTGCACATCATGG
TGAAGGTGGTGAAGGGCCACCGCCCCGAGCTGCCGCCCGTGTGCAGAGCCCGGCCGCGCGCCTGCAGCCA
CCTGATACGCCTCATGCAGCGGTGCTGGCAGGGGGATCCGCGAGTTAGGCCCACCTTCCAAGAAATTACT
TCTGAAACCGAGGACCTGTGTGAAAAGCCTGATGACGAAGTGAAAGAAACTGCTCATGATCTGGACGTGA
AAAGCCCCCCGGAGCCCAGGAGCGAGGTGGTGCCTGCGAGGCTCAAGCGGGCCTCTGCCCCCACCTTCGA
TAACGACTACAGCCTCTCCGAGCTGCTCTCACAGCTGGACTCTGGAGTTTCCCAGGCTGTCGAGGGCCCC
GAGGAGCTCAGCCGCAGCTCCTCTGAGTCCAAGCTGCCATCGTCCGGCAGTGGGAAGAGGCTCTCGGGGG
TGTCCTCGGTGGACTCCGCCTTCTCTTCCAGAGGATCACTGTCGCTGTCCTTTGAGCGGGAACCTTCAAC
CAGCGATCTGGGCACCACAGACGTCCAGAAGAAGAAGCTTGTGGATGCCATCGTGTCCGGGGACACCAGC
AAACTGATGAAGATCCTGCAGCCGCAGGACGTGGACCTGGCACTGGACAGCGGTGCCAGCCTGCTGCACC
TGGCGGTGGAGGCCGGGCAAGAGGAGTGCGCCAAGTGGCTGCTGCTCAACAATGCCAACCCCAACCTGAG
CAACCGTAGGGGCTCCACCCCGTTGCACATGGCCGTGGAGAGGAGGGTGCGGGGTGTCGTGGAGCTCCTG
CTGGCGCGGAAGATCAGTGTCAACGCCAAGGATGAGGACCAGTGGACAGCCCTCCACTTTGCAGCCCAGA
ACGGGGACGAGTCTAGCACACGGCTGCTGTTGGAGAAGAACGCCTCGGTCAACGAGGTGGACTTTGAGGG
CCGGACGCCCATGCACGTGGCCTGCCAGCACGGGCAGGAGAATATCGTGCGCATCCTGCTGCGCCGAGGC
GTGGACGTGAGCCTGCAGGGCAAGGATGCCTGGCTGCCACTGCACTACGCTGCCTGGCAGGGCCACCTGC
CCATCGTCAAGCTGCTGGCCAAGCAGCCGGGGGTGAGTGTGAACGCCCAGACGCTGGATGGGAGGACGCC
ATTGCACCTGGCCGCACAGCGCGGGCACTACCGCGTGGCCCGCATCCTCATCGACCTGTGCTCCGACGTC
AACGTCTGCAGCCTGCTGGCACAGACACCCCTGCACGTGGCCGCGGAGACGGGGCACACGAGCACTGCCA
GGCTGCTCCTGCATCGGGGCGCTGGCAAGGAGGCCATGACCTCAGACGGCTACACCGCTCTGCACCTGGC
TGCCCGCAACGGACACCTGGCCACTGTCAAGCTGCTTGTCGAGGAGAAGGCCGATGTGCTGGCCCGGGGA
CCCCTGAACCAGACGGCGCTGCACCTGGCTGCCGCCCACGGGCACTCGGAGGTGGTGGAGGAGTTGGTCA
GCGCCGATGTCATTGACCTGTTCGACGAGCAGGGGCTCAGCGCGCTGCACCTGGCCGCCCAGGGCCGGCA
CGCACAGACGGTGGAGACTCTGCTCAGGCATGGGGCCCACATCAACCTGCAGAGCCTCAAGTTCCAGGGC
GGCCATGGCCCCGCCGCCACGCTCCTGCGGCGAAGCAAGACCTAG

Translation (784 aa):
MEGDGGTPWALALLRTFDAGEFTGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEA
KKMEMAKFRYILPVYGICREPVGLVMEYMETGSLEKLLASEPLPWDLRFRIIHETAVGMNFLHCMAPPLL
HLDLKPANILLDAHYHVKISDFGLAKCNGLSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFA
IVIWGVLTQKKPFADEKNILHIMVKVVKGHRPELPPVCRARPRACSHLIRLMQRCWQGDPRVRPTFQEIT
SETEDLCEKPDDEVKETAHDLDVKSPPEPRSEVVPARLKRASAPTFDNDYSLSELLSQLDSGVSQAVEGP
EELSRSSSESKLPSSGSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTSDLGTTDVQKKKLVDAIVSGDTS
KLMKILQPQDVDLALDSGASLLHLAVEAGQEECAKWLLLNNANPNLSNRRGSTPLHMAVERRVRGVVELL
LARKISVNAKDEDQWTALHFAAQNGDESSTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRILLRRG
VDVSLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDV
NVCSLLAQTPLHVAAETGHTSTARLLLHRGAGKEAMTSDGYTALHLAARNGHLATVKLLVEEKADVLARG
PLNQTALHLAAAHGHSEVVEELVSADVIDLFDEQGLSALHLAAQGRHAQTVETLLRHGAHINLQSLKFQG
GHGPAATLLRRSKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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