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Report for CCDS1366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1366.1 Public Homo sapiens 1 TRMT1L 24 110 108 CCDS HistoryNCBI Gene:81627Re-query CCDS DB by CCDS ID:1366.1Re-query CCDS DB by GeneID:81627See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367506.10 ENSP00000356476.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367506.10Link to Ensembl Protein Viewer:ENSP00000356476.5Re-query CCDS DB by Nucleotide ID:ENST00000367506Re-query CCDS DB by Protein ID:ENSP00000356476
Original member Current member NCBI NM_030934.5 NP_112196.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030934.5Link to Protein Sequence:NP_112196.3Re-query CCDS DB by Nucleotide ID:NM_030934Re-query CCDS DB by Protein ID:NP_112196Link to BLAST:NP_112196.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112196.3 733 Q7Z2T5-1 733 100% 0 0

Chromosomal Locations for CCDS 1366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 185120019 185120271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185120383 185120509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185123857 185123919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185124944 185125110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185128669 185128747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185137606 185137796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185139367 185139579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185139973 185140222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185143357 185143436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185143906 185144029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185145439 185145568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185147182 185147246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185150379 185150492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185151825 185151935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185156478 185156712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGAGAATATGGCGGAGGAGGAGCTGCTGCCCCTGGAGAAGGAGGAGGTGGAGGTGGCCCAGGTCCAGG
TCCCGACCCCGGCCCGGGACTCGGCTGGGGTCCCAGCTCCGGCCCCGGATTCGGCTCTGGACTCGGCTCC
GACTCCGGCCTCGGCTCCAGCCCCAGCCCCTGCCCTGGCCCAGGCTCCGGCCCTGTCCCCGTCCCTAGCC
TCTGCCCCTGAGGAGGCTAAAAGCAAGAGACACATCTCAATTCAAAGGCAGCTTGCTGATCTAGAGAATT
TAGCTTTTGTAACTGATGGAAATTTTGACTCTGCCAGCTCATTGAACTCAGATAATCTTGATGCAGGCAA
CAGACAGGCTTGTCCATTGTGCCCTAAGGAAAAATTCAGAGCTTGTAATAGCCATAAGCTTCGTCGTCAC
CTCCAGAATTTACACTGGAAAGTCTCAGTTGAATTTGAAGGTTACAGGATGTGCATCTGTCACTTACCTT
GTCGACCAGTGAAACCAAACATTATTGGAGAACAGATAACCAGTAAAATGGGAGCCCATTATCATTGTAT
CATTTGTTCAGCAACAATCACCAGAAGAACTGATATGCTAGGACATGTTAGGCGCCACATGAATAAAGGA
GAGACTAAATCTAGTTATATTGCAGCTTCCACTGCTAAACCACCTAAGGAAATTTTGAAAGAGGCAGACA
CGGATGTACAAGTTTGTCCCAACTATTCTATACCTCAGAAAACAGATTCCTATTTTAACCCCAAAATGAA
ACTAAATCGGCAGCTAATATTCTGTACATTGGCTGCTTTGGCTGAGGAACGAAAACCTTTGGAATGTCTA
GATGCTTTTGGAGCCACTGGGATAATGGGATTACAGTGGGCAAAACATCTTGGAAATGCAGTCAAAGTTA
CAATCAATGACTTGAATGAAAATTCTGTGACACTGATTCAGGAAAACTGCCATTTAAACAAATTGAAAGT
GGTGGTGGACAGTAAGGAAAAGGAAAAGAGTGATGATATTCTTGAAGAAGGAGAGAAAAATCTTGGTAAT
ATTAAGGTGACCAAAATGGATGCCAATGTACTGATGCATTTGAGATCTTTTGATTTCATACATCTAGACC
CTTTTGGAACATCAGTGAATTATCTAGATTCTGCATTCAGAAATATAAGAAACCTTGGCATAGTGTCAGT
GACTTCTACAGATATCAGTTCTTTATATGCCAAGGCACAGCATGTTGCCCGGCGTCACTACGGATGTAAC
ATTGTCCGAACTGAATATTACAAGGAACTAGCAGCCAGAATTGTTGTAGCTGCAGTGGCAAGAGCTGCAG
CCCGATGCAACAAAGGCATAGAAGTACTGTTTGCAGTGGCTCTGGAACATTTTGTGTTGGTAGTTGTGAG
AGTTTTGAGGGGACCTACTTCAGCAGATGAAACAGCCAAGAAGATTCAATACCTGATCCATTGTCAGTGG
TGTGAAGAGAGAATTTTTCAGAAGGATGGTAATATGGTAGAAGAAAACCCATATAGACAGCTGCCTTGTA
ACTGTCATGGAAGCATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTGTGGTCAAGTTCCCTTTTCAA
TACTGGATTCCTCAAAAGAATGCTATTTGAATCTCTTCACCATGGTTTGGATGACATTCAGACCCTAATA
AAGACATTAATCTTTGAATCAGAGTGTACGCCTCAAAGTCAGTTTTCAATTCATGCATCTTCAAATGTCA
ACAAGCAAGAAGAAAATGGTGTATTTATTAAAACTACAGATGACACCACAACAGATAATTACATTGCACA
AGGAAAGAGAAAAAGTAATGAAATGATCACAAATTTAGGCAAGAAGCAAAAGACTGATGTCAGTACTGAA
CATCCTCCCTTTTATTACAACATTCACAGACACAGCATTAAAGGAATGAATATGCCAAAGTTAAAAAAGT
TTTTGTGCTATTTATCTCAAGCAGGCTTTCGAGTAAGCCGAACTCATTTTGACCCAATGGGTGTACGCAC
AGATGCACCTCTGATGCAGTTTAAATCTATCCTTTTAAAGTACAGCACCCCCACCTACACTGGAGGACAG
TCAGAAAGCCATGTCCAGTCAGCATCTGAAGATACAGTAACTGAAAGAGTTGAAATGTCAGTGAATGACA
AAGCAGAAGCAAGTGGCTGCAGAAGATGGTAA

Translation (733 aa):
MENMAEEELLPLEKEEVEVAQVQVPTPARDSAGVPAPAPDSALDSAPTPASAPAPAPALAQAPALSPSLA
SAPEEAKSKRHISIQRQLADLENLAFVTDGNFDSASSLNSDNLDAGNRQACPLCPKEKFRACNSHKLRRH
LQNLHWKVSVEFEGYRMCICHLPCRPVKPNIIGEQITSKMGAHYHCIICSATITRRTDMLGHVRRHMNKG
ETKSSYIAASTAKPPKEILKEADTDVQVCPNYSIPQKTDSYFNPKMKLNRQLIFCTLAALAEERKPLECL
DAFGATGIMGLQWAKHLGNAVKVTINDLNENSVTLIQENCHLNKLKVVVDSKEKEKSDDILEEGEKNLGN
IKVTKMDANVLMHLRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYAKAQHVARRHYGCN
IVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSADETAKKIQYLIHCQW
CEERIFQKDGNMVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGFLKRMLFESLHHGLDDIQTLI
KTLIFESECTPQSQFSIHASSNVNKQEENGVFIKTTDDTTTDNYIAQGKRKSNEMITNLGKKQKTDVSTE
HPPFYYNIHRHSIKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQ
SESHVQSASEDTVTERVEMSVNDKAEASGCRRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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