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Report for CCDS13501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13501.1 Public Homo sapiens 20 SLCO4A1 24 110 108 CCDS HistoryNCBI Gene:28231Re-query CCDS DB by CCDS ID:13501.1Re-query CCDS DB by GeneID:28231See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13501.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217159.6 ENSP00000217159.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217159.6Link to Ensembl Protein Viewer:ENSP00000217159.1Re-query CCDS DB by Nucleotide ID:ENST00000217159Re-query CCDS DB by Protein ID:ENSP00000217159
Original member Current member EBI ENST00000370507.5 ENSP00000359538.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370507.5Link to Ensembl Protein Viewer:ENSP00000359538.1Re-query CCDS DB by Nucleotide ID:ENST00000370507Re-query CCDS DB by Protein ID:ENSP00000359538
Original member Current member NCBI NM_016354.4 NP_057438.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016354.4Link to Protein Sequence:NP_057438.3Re-query CCDS DB by Nucleotide ID:NM_016354Re-query CCDS DB by Protein ID:NP_057438Link to BLAST:NP_057438.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057438.3 722 Q96BD0-1 722 100% 0 0

Chromosomal Locations for CCDS 13501.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62656455 62657250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62658677 62658767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62660412 62660533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62661064 62661175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62664934 62665088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62666380 62666575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62667745 62667910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62668012 62668184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62668477 62668541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62668930 62669078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62671750 62671893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGCCCCTGCATCAGCTGGGGGACAAGCCGCTCACCTTCCCCAGCCCCAACTCAGCCATGGAAAACGGGC
TTGACCACACCCCACCCAGCAGGAGGGCATCCCCGGGCACACCCCTGAGCCCCGGCTCCCTCCGCTCCGC
TGCCCATAGCCCCCTGGACACCAGCAAGCAGCCCCTCTGCCAGCTCTGGGCCGAGAAGCATGGCGCCCGG
GGGACCCATGAGGTGCGGTACGTCTCGGCCGGGCAGAGCGTGGCGTGCGGCTGGTGGGCCTTCGCACCGC
CGTGCCTGCAGGTCCTCAACACGCCCAAGGGCATCCTGTTCTTCCTGTGTGCGGCCGCATTCCTGCAGGG
GATGACTGTGAATGGCTTCATCAACACAGTCATCACCTCCCTGGAGCGCCGCTATGACCTGCACAGCTAC
CAGAGCGGGCTCATCGCCAGCTCCTACGACATTGCCGCCTGCCTCTGCCTCACCTTCGTCAGCTACTTCG
GGGGCTCAGGGCACAAGCCGCGCTGGCTGGGCTGGGGCGTGCTGCTTATGGGCACGGGGTCGCTGGTGTT
CGCGCTGCCCCACTTCACGGCTGGCCGCTATGAGGTGGAGTTGGACGCGGGTGTCAGGACGTGCCCTGCC
AACCCCGGCGCGGTGTGTGCGGACAGCACCTCGGGCCTGTCCCGCTACCAGCTGGTCTTCATGCTGGGCC
AGTTCCTGCATGGCGTGGGTGCCACACCCCTCTACACGCTGGGCGTCACCTACCTGGATGAGAACGTCAA
GTCCAGCTGCTCGCCCGTCTACATTGCCATCTTCTACACAGCGGCCATCCTGGGCCCAGCTGCCGGCTAC
CTGATTGGAGGTGCCCTGCTGAATATCTACACGGAAATGGGCCGACGGACGGAGCTGACCACCGAGAGCC
CACTGTGGGTCGGCGCCTGGTGGGTCGGCTTCCTGGGCTCTGGGGCCGCTGCTTTCTTCACCGCCGTTCC
CATCCTTGGTTACCCTCGGCAGCTGCCAGGCTCCCAGCGCTACGCGGTCATGAGAGCGGCGGAAATGCAC
CAGTTGAAGGACAGCAGCCGTGGGGAGGCGAGCAACCCGGACTTTGGGAAAACCATCAGAGACCTGCCTC
TCTCCATCTGGCTCCTGCTGAAGAACCCCACGTTCATCCTGCTCTGCCTGGCCGGGGCCACCGAGGCCAC
TCTCATCACCGGCATGTCCACGTTCAGCCCCAAGTTCTTGGAGTCCCAGTTCAGCCTGAGTGCCTCAGAA
GCTGCCACCTTGTTTGGGTACCTGGTGGTGCCAGCGGGTGGTGGCGGCACCTTCCTGGGCGGCTTCTTTG
TGAACAAGCTCAGGCTCCGGGGCTCCGCGGTCATCAAGTTCTGCCTGTTCTGCACCGTTGTCAGCCTGCT
GGGCATCCTCGTCTTCTCACTGCACTGCCCCAGTGTGCCCATGGCGGGCGTCACAGCCAGCTACGGCGGG
AGCCTCCTGCCCGAAGGCCACCTGAACCTAACGGCTCCCTGCAACGCTGCCTGCAGCTGCCAGCCAGAAC
ACTACAGCCCTGTGTGCGGCTCGGACGGCCTCATGTACTTCTCACTGTGCCACGCAGGGTGCCCTGCAGC
CACGGAGACGAATGTGGACGGCCAGAAGGTGTACCGAGACTGTAGCTGTATCCCTCAGAATCTTTCCTCT
GGTTTTGGCCATGCCACTGCAGGGAAATGCACTTCAACTTGTCAGAGAAAGCCCCTCCTTCTGGTTTTCA
TATTCGTTGTAATTTTCTTTACATTCCTCAGCAGCATTCCTGCACTAACGGCAACTCTACGATGTGTCCG
TGACCCTCAGAGATCCTTTGCCCTGGGAATCCAGTGGATTGTAGTTAGAATACTAGGGGGCATCCCGGGG
CCCATCGCCTTCGGCTGGGTGATCGACAAGGCCTGTCTGCTGTGGCAGGACCAGTGTGGCCAGCAGGGCT
CCTGCTTGGTGTACCAGAATTCGGCCATGAGCCGCTACATACTCATCATGGGGCTCCTGTACAAGGTGCT
GGGCGTCCTCTTCTTTGCCATAGCCTGCTTCTTATACAAGCCCCTGTCGGAGTCTTCAGATGGCCTGGAA
ACTTGTCTGCCCAGCCAGTCCTCAGCCCCTGACAGTGCCACAGATAGCCAGCTCCAGAGCAGCGTCTGA

Translation (722 aa):
MPLHQLGDKPLTFPSPNSAMENGLDHTPPSRRASPGTPLSPGSLRSAAHSPLDTSKQPLCQLWAEKHGAR
GTHEVRYVSAGQSVACGWWAFAPPCLQVLNTPKGILFFLCAAAFLQGMTVNGFINTVITSLERRYDLHSY
QSGLIASSYDIAACLCLTFVSYFGGSGHKPRWLGWGVLLMGTGSLVFALPHFTAGRYEVELDAGVRTCPA
NPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGY
LIGGALLNIYTEMGRRTELTTESPLWVGAWWVGFLGSGAAAFFTAVPILGYPRQLPGSQRYAVMRAAEMH
QLKDSSRGEASNPDFGKTIRDLPLSIWLLLKNPTFILLCLAGATEATLITGMSTFSPKFLESQFSLSASE
AATLFGYLVVPAGGGGTFLGGFFVNKLRLRGSAVIKFCLFCTVVSLLGILVFSLHCPSVPMAGVTASYGG
SLLPEGHLNLTAPCNAACSCQPEHYSPVCGSDGLMYFSLCHAGCPAATETNVDGQKVYRDCSCIPQNLSS
GFGHATAGKCTSTCQRKPLLLVFIFVVIFFTFLSSIPALTATLRCVRDPQRSFALGIQWIVVRILGGIPG
PIAFGWVIDKACLLWQDQCGQQGSCLVYQNSAMSRYILIMGLLYKVLGVLFFAIACFLYKPLSESSDGLE
TCLPSQSSAPDSATDSQLQSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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