NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13453.1 Public Homo sapiens 20 RTF2 24 110 108 CCDS HistoryNCBI Gene:51507Re-query CCDS DB by CCDS ID:13453.1Re-query CCDS DB by GeneID:51507See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357348.10 ENSP00000349906.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357348.10Link to Ensembl Protein Viewer:ENSP00000349906.6Re-query CCDS DB by Nucleotide ID:ENST00000357348Re-query CCDS DB by Protein ID:ENSP00000349906
Original member Current member NCBI NM_016407.5 NP_057491.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016407.5Link to Protein Sequence:NP_057491.2Re-query CCDS DB by Nucleotide ID:NM_016407Re-query CCDS DB by Protein ID:NP_057491Link to BLAST:NP_057491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057491.2 306 Q9BY42 306 100% 0 0

Chromosomal Locations for CCDS 13453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56468698 56468766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56473301 56473395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56474678 56474771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56476985 56477124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56484111 56484189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56513315 56513428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56516935 56516989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56517106 56517201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56518087 56518265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGGTTGCGACGGGGGAACAATCCCCAAGAGGCATGAACTGGTGAAGGGGCCGAAGAAGGTTGAGAAGG
TCGACAAAGATGCTGAATTAGTGGCCCAATGGAACTATTGTACTCTAAGTCAGGAAATATTAAGACGACC
AATAGTTGCCTGTGAACTTGGCAGACTTTATAACAAAGATGCCGTCATTGAATTTCTCTTGGACAAATCT
GCAGAAAAGGCTCTTGGGAAGGCAGCATCTCACATTAAAAGCATTAAGAATGTGACAGAGCTGAAGCTTT
CTGATAATCCTGCCTGGGAAGGGGATAAAGGAAACACTAAAGGTGACAAGCACGATGACCTCCAGCGGGC
GCGTTTCATCTGCCCCGTTGTGGGCCTGGAGATGAACGGCCGACACAGGTTCTGCTTCCTTCGGTGCTGC
GGCTGTGTGTTTTCTGAGCGAGCCTTGAAAGAGATAAAAGCGGAAGTTTGCCACACGTGTGGGGCTGCCT
TCCAGGAGGATGATGTCATCATGCTCAATGGCACCAAGGAGGATGTGGACGTGCTGAAGACAAGGATGGA
GGAGAGAAGGCTGAGAGCGAAGCTGGAAAAGAAAACAAAGAAACCCAAGGCAGCAGAGTCTGTTTCAAAA
CCAGATGTCAGTGAAGAAGCCCCAGGGCCATCAAAAGTTAAGACAGGGAAGCCTGAAGAAGCCAGCCTTG
ATTCTAGAGAGAAGAAAACCAACTTGGCTCCCAAAAGCACAGCAATGAATGAGAGCTCTTCTGGAAAAGC
TGGGAAGCCTCCGTGTGGAGCCACAAAGAGGTCCATCGCTGACAGTGAAGAATCGGAGGCCTACAAGTCC
CTCTTTACCACTCACAGCTCCGCCAAGCGCTCCAAGGAGGAGTCTGCCCACTGGGTCACCCACACGTCCT
ACTGCTTCTGA

Translation (306 aa):
MGCDGGTIPKRHELVKGPKKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKS
AEKALGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCC
GCVFSERALKEIKAEVCHTCGAAFQEDDVIMLNGTKEDVDVLKTRMEERRLRAKLEKKTKKPKAAESVSK
PDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTAMNESSSGKAGKPPCGATKRSIADSEESEAYKS
LFTTHSSAKRSKEESAHWVTHTSYCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH