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Report for CCDS13352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13352.1 Public Homo sapiens 20 TP53TG5 24 110 108 CCDS HistoryNCBI Gene:27296Re-query CCDS DB by CCDS ID:13352.1Re-query CCDS DB by GeneID:27296See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372726.5 ENSP00000361811.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372726.5Link to Ensembl Protein Viewer:ENSP00000361811.3Re-query CCDS DB by Nucleotide ID:ENST00000372726Re-query CCDS DB by Protein ID:ENSP00000361811
Original member Current member NCBI NM_014477.3 NP_055292.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014477.3Link to Protein Sequence:NP_055292.1Re-query CCDS DB by Nucleotide ID:NM_014477Re-query CCDS DB by Protein ID:NP_055292Link to BLAST:NP_055292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055292.1 290 Q9Y2B4 290 100% 0 0

Chromosomal Locations for CCDS 13352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45373907 45374011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45375039 45375552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45377212 45377342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45377539 45377613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45378189 45378236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAGTCCATCAGCAAAGAAGAGGCCCAAGAACAGCAGGGTTTCCAAGATGCAAGATGAGAAACTGCGGG
ACGAGACAGAGCAGCCTGTGAGCAAAGTAATTGAGCGGAACCGTCTGAGAACGGTGTTAAAAAACTTGTC
GCTCTTGAAGCTACTCAAGAGCTCAAACCGCCGGATCCAAGAACTGCATAAGCTGGCCAAAAGGTGTTGG
CATTCACTGCTCAGTGTTCCAAAGATTCTCCGCATCTCCTCTGGGGAAAACAGTGCCTGCAATAAAACAA
AACAAAATAATGAAGAGTTCCAGGAGATCGGGTGCTCCGAGAAGGAACTCAAGTCCAAGAAATTAGAGTC
CACAGGGGACCCTAAGAAAAAAGAGTACAAGGAGTGGAAGTCCCAGGTGCAGTCAGGGATGAGGAACAAG
GAGAAAACGTCATTGGCGGCAATGCCACGGAAAGAAAAGCATATAGAGCCTGAGGTTCCAAGGACATCGA
GGGATGATAGCTTGAACCCTGGAGTCCAGGGGAGGCAACCACTCACCGAGGGCCCCCGAGTCATCTTCAT
TAAGCCCTACCGCAATAGAACTCCCATGGGGCACATGAAGCAGCTGGATGTAGCCGACCAGTGGATCTGG
TTTGAGGGGCTGCCCACACGAATCCACCTCCCGGCGCCCAGGGTGATGTGCAGATCCTCCACCCTGCGTT
GGGTCAAGCGCCGCTGCACCCGCTTCTGCTCCGCATCACTTGAAATGCCTATGTGGCATCCATACAAGGT
TGATGTGACCTGGACGAGAGCCAGAGGTGCGAGCAGAGGGTGGAGATCGCGCCATCAGCTGAAGGGGAGG
AATGGGTGGCGAAATTCACGAGTCTACAAATAA

Translation (290 aa):
MSPSAKKRPKNSRVSKMQDEKLRDETEQPVSKVIERNRLRTVLKNLSLLKLLKSSNRRIQELHKLAKRCW
HSLLSVPKILRISSGENSACNKTKQNNEEFQEIGCSEKELKSKKLESTGDPKKKEYKEWKSQVQSGMRNK
EKTSLAAMPRKEKHIEPEVPRTSRDDSLNPGVQGRQPLTEGPRVIFIKPYRNRTPMGHMKQLDVADQWIW
FEGLPTRIHLPAPRVMCRSSTLRWVKRRCTRFCSASLEMPMWHPYKVDVTWTRARGASRGWRSRHQLKGR
NGWRNSRVYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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