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Report for CCDS13209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13209.1 Public Homo sapiens 20 SUN5 24 110 108 CCDS HistoryNCBI Gene:140732Re-query CCDS DB by CCDS ID:13209.1Re-query CCDS DB by GeneID:140732See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356173.8 ENSP00000348496.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356173.8Link to Ensembl Protein Viewer:ENSP00000348496.3Re-query CCDS DB by Nucleotide ID:ENST00000356173Re-query CCDS DB by Protein ID:ENSP00000348496
Original member Current member NCBI NM_080675.4 NP_542406.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080675.4Link to Protein Sequence:NP_542406.2Re-query CCDS DB by Nucleotide ID:NM_080675Re-query CCDS DB by Protein ID:NP_542406Link to BLAST:NP_542406.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542406.2 379 Q8TC36 379 100% 0 0

Chromosomal Locations for CCDS 13209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 32983794 32983949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32985099 32985185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32985736 32985903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32987660 32987775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32989620 32989698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32995619 32995727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32996324 32996358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 32997638 32997687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33000074 33000135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33001212 33001278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33002587 33002661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33002861 33002919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33004264 33004340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGCCACGGTCCTCAAGGAGCCCTGGGGACCCAGGCGCCCTACTCGAAGATGTGGCCCACAATCCCAGAC
CCCGGAGGATTGCCCAGCGAGGCCGGAACACCAGCAGGATGGCAGAGGACACCTCCCCAAACATGAATGA
CAACATCCTGTTGCCTGTCCGCAACAATGACCAAGCCCTAGGCCTGACTCAGTGCATGCTGGGATGTGTG
TCCTGGTTCACCTGTTTTGCCTGCTCCCTGAGAACTCAGGCCCAGCAGGTTCTGTTTAACACGTGCAGAT
GCAAGCTGCTGTGCCAGAAGCTCATGGAGAAGACAGGCATTCTGCTCCTCTGTGCTTTCGGATTCTGGAT
GTTTTCTATTCACTTACCATCGAAAATGAAAGTCTGGCAGGATGACAGCATAAATGGTCCACTGCAGAGC
TTGAGGTTGTACCAGGAGAAGGTGCGACATCACAGTGGGGAAATCCAGGACCTCCGAGGTAGCATGAACC
AGCTCATTGCCAAGCTCCAGGAGATGGAAGCCATGTCCGATGAGCAAAAAATGGCCCAGAAAATAATGAA
GATGATACACGGAGATTACATCGAAAAGCCAGACTTTGCCCTGAAGTCTATAGGGGCCAGCATTGACTTT
GAGCACACGTCAGTCACCTATAACCATGAGAAGGCCCACTCCTACTGGAACTGGATCCAGCTGTGGAACT
ACGCACAGCCCCCAGACGTGATCCTTGAGCCCAACGTGACACCTGGCAATTGCTGGGCCTTTGAGGGTGA
CCGCGGCCAGGTGACCATCCAATTGGCTCAGAAGGTTTACCTGTCCAACCTCACGCTGCAGCACATCCCC
AAGACCATCTCATTGTCAGGCAGCCTGGACACCGCCCCCAAGGACTTCGTCATCTATGGCATGGAGGGCT
CCCCCAAGGAGGAGGTGTTCCTGGGGGCATTTCAGTTTCAGCCAGAAAACATCATCCAGATGTTCCCACT
CCAGAACCAGCCGGCCCGGGCTTTCAGTGCGGTCAAGGTGAAGATCTCAAGCAACTGGGGGAACCCAGGC
TTCACTTGCCTGTACCGCGTGCGAGTGCATGGCTCTGTGGCCCCGCCCAGAGAGCAGCCTCACCAGAACC
CCTACCCTAAGAGAGATTAA

Translation (379 aa):
MPRSSRSPGDPGALLEDVAHNPRPRRIAQRGRNTSRMAEDTSPNMNDNILLPVRNNDQALGLTQCMLGCV
SWFTCFACSLRTQAQQVLFNTCRCKLLCQKLMEKTGILLLCAFGFWMFSIHLPSKMKVWQDDSINGPLQS
LRLYQEKVRHHSGEIQDLRGSMNQLIAKLQEMEAMSDEQKMAQKIMKMIHGDYIEKPDFALKSIGASIDF
EHTSVTYNHEKAHSYWNWIQLWNYAQPPDVILEPNVTPGNCWAFEGDRGQVTIQLAQKVYLSNLTLQHIP
KTISLSGSLDTAPKDFVIYGMEGSPKEEVFLGAFQFQPENIIQMFPLQNQPARAFSAVKVKISSNWGNPG
FTCLYRVRVHGSVAPPREQPHQNPYPKRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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