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Report for CCDS13111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13111.1 Public Homo sapiens 20 MKKS 24 110 108 CCDS HistoryNCBI Gene:8195Re-query CCDS DB by CCDS ID:13111.1Re-query CCDS DB by GeneID:8195See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347364.7 ENSP00000246062.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347364.7Link to Ensembl Protein Viewer:ENSP00000246062.4Re-query CCDS DB by Nucleotide ID:ENST00000347364Re-query CCDS DB by Protein ID:ENSP00000246062
Original member Current member EBI ENST00000399054.6 ENSP00000382008.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399054.6Link to Ensembl Protein Viewer:ENSP00000382008.2Re-query CCDS DB by Nucleotide ID:ENST00000399054Re-query CCDS DB by Protein ID:ENSP00000382008
Original member Current member EBI ENST00000651692.1 ENSP00000498849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651692.1Link to Ensembl Protein Viewer:ENSP00000498849.1Re-query CCDS DB by Nucleotide ID:ENST00000651692Re-query CCDS DB by Protein ID:ENSP00000498849
Original member Current member NCBI NM_018848.3 NP_061336.1 Accepted alive Link to Nucleotide Sequence:NM_018848.3Link to Protein Sequence:NP_061336.1Re-query CCDS DB by Nucleotide ID:NM_018848Re-query CCDS DB by Protein ID:NP_061336Link to BLAST:NP_061336.1
Original member Current member NCBI NM_170784.3 NP_740754.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_170784.3Link to Protein Sequence:NP_740754.1Re-query CCDS DB by Nucleotide ID:NM_170784Re-query CCDS DB by Protein ID:NP_740754Link to BLAST:NP_740754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061336.1 570 Q9NPJ1 570 100% 0 0
NP_740754.1 570 Q9NPJ1 570 100% 0 0

Chromosomal Locations for CCDS 13111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 10405247 10405687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10407616 10407726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10408628 10408803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10412530 10413514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGTCTCGTTTGGAAGCTAAGAAGCCATCATTGTGTAAGAGTGAACCACTGACAACTGAGAGAGTCAGGA
CCACACTTTCTGTCTTGAAAAGAATTGTAACATCATGCTATGGCCCCTCAGGTAGGCTGAAGCAGCTGCA
CAATGGCTTTGGAGGTTACGTGTGTACAACCTCACAGTCCTCAGCTCTGCTCAGTCACCTTTTGGTCACA
CATCCCATTTTAAAGATCCTGACAGCCTCCATACAGAATCATGTGTCAAGCTTCAGTGATTGTGGCTTAT
TCACAGCTATTCTTTGCTGCAACCTGATTGAAAATGTTCAGAGATTAGGCTTGACACCCACCACTGTCAT
TAGATTAAATAAACATCTTTTGAGTCTTTGCATCAGTTATCTCAAGTCTGAGACCTGTGGTTGTCGAATC
CCAGTGGACTTTAGTAGTACTCAGATCCTCCTTTGTTTGGTGCGTAGTATATTAACAAGTAAACCTGCCT
GTATGCTCACCAGAAAGGAAACAGAGCATGTCAGTGCTTTGATCCTGAGAGCCTTTTTGCTTACAATTCC
AGAAAATGCTGAAGGCCACATCATTTTAGGAAAGAGTTTAATTGTACCTTTAAAAGGTCAAAGAGTTATA
GATTCCACTGTATTACCTGGGATACTCATTGAAATGTCAGAAGTTCAATTAATGAGGCTATTACCTATCA
AAAAATCAACTGCCCTCAAGGTGGCACTCTTTTGTACAACTTTATCCGGAGACACTTCTGACACTGGAGA
AGGAACTGTGGTGGTCAGTTATGGGGTTTCTCTTGAAAATGCAGTCTTGGACCAGCTGCTTAACCTAGGA
AGGCAGCTAATCAGTGACCACGTAGATCTTGTCCTGTGCCAAAAAGTTATACATCCATCTTTGAAGCAGT
TTCTCAATATGCATCGTATTATTGCCATAGACAGAATTGGAGTGACTCTGATGGAACCCCTGACTAAAAT
GACAGGAACACAGCCTATTGGATCCCTAGGCTCAATATGTCCTAATAGTTATGGAAGTGTGAAAGATGTG
TGCACTGCAAAATTTGGCTCCAAACATTTTTTTCATCTTATTCCTAATGAAGCAACAATCTGCAGCTTGC
TTCTCTGCAACAGAAATGACACTGCCTGGGATGAGCTGAAGCTCACGTGTCAGACGGCACTGCATGTCCT
GCAGTTAACACTCAAGGAACCATGGGCTTTGTTGGGAGGTGGCTGTACTGAAACTCATTTGGCTGCATAT
ATCAGACACAAGACTCACAACGACCCAGAAAGCATTCTCAAAGATGATGAATGTACTCAAACAGAACTTC
AATTAATTGCTGAAGCATTTTGCAGTGCCCTAGAATCTGTTGTTGGCTCTTTAGAACATGATGGAGGTGA
AATTCTCACTGACATGAAGTATGGACACCTTTGGTCAGTTCAGGCAGATTCTCCCTGTGTTGCTAACTGG
CCAGATTTGCTTTCACAGTGTGGCTGTGGATTATACAATAGCCAGGAAGAACTCAACTGGTCTTTCTTAA
GAAGCACACGTCGTCCATTTGTGCCACAAAGCTGCCTTCCACATGAAGCTGTGGGCTCAGCCAGCAACCT
GACCTTGGACTGTTTGACTGCAAAGCTTAGTGGCCTACAGGTGGCTGTAGAGACAGCCAATTTGATTTTG
GATCTTTCATATGTTATTGAAGATAAAAACTAA

Translation (570 aa):
MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVT
HPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLNKHLLSLCISYLKSETCGCRI
PVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIVPLKGQRVI
DSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLG
RQLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDV
CTAKFGSKHFFHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY
IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSVQADSPCVANW
PDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLDCLTAKLSGLQVAVETANLIL
DLSYVIEDKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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