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Report for CCDS13056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13056.1 Public Homo sapiens 20 GFRA4 24 110 108 CCDS HistoryNCBI Gene:64096Re-query CCDS DB by CCDS ID:13056.1Re-query CCDS DB by GeneID:64096See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13056.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319242.8 ENSP00000313423.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319242.8Link to Ensembl Protein Viewer:ENSP00000313423.3Re-query CCDS DB by Nucleotide ID:ENST00000319242Re-query CCDS DB by Protein ID:ENSP00000313423
Original member Current member NCBI NM_145762.3 NP_665705.1 Accepted alive Link to Nucleotide Sequence:NM_145762.3Link to Protein Sequence:NP_665705.1Re-query CCDS DB by Nucleotide ID:NM_145762Re-query CCDS DB by Protein ID:NP_665705Link to BLAST:NP_665705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665705.1 299 Q9GZZ7-1 299 100% 0 0

Chromosomal Locations for CCDS 13056.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3659909 3659989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3660158 3660249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3660526 3660671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3660755 3661289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3663354 3663399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGTCCGCTGCCTGGGGCCTGCGCTGCTGCTGCTGCTGTTACTGGGGTCGGCGAGCTCGGTCGGAGGGA
ACCGATGTGTGGACGCGGCCGAAGCCTGCACGGCGGACGCGCGGTGCCAGCGTTTGCGCTCCGAGTATGT
GGCGCAGTGCCTGGGCCGGGCTGCGCAGGGGGGCTGTCCCCGCGCCCGCTGCCGCCGGGCCCTGCGCCGC
TTCTTCGCCCGCGGGCCGCCCGCGCTCACCCACGCACTGCTCTTCTGCCCGTGCGCGGGCCCCGCGTGCG
CCGAGCGTCGGCGCCAGACCTTCGTGCCCTCCTGCGCCTTTTCGGGGCCCGGCCCCGCGCCGCCCTCCTG
CCTTGAGCCCTTAAACTTCTGCGAGCGCAGCCGGGTCTGCAGGTGCGCGCGGGCGGCGGCGGGGCCGTGG
CGAGGGTGGGGACGGGGCCTCTCTCCGGCTCACCGCCCTCCCGCCGCGCAGGCCTCGCCTCCTGGCCTTT
CAGGTCTCGTGCACCCCAGCGCCCAGCGCCCCCGACGGCTGCCTGCTGGACCAGGGCGCCCGCTGCCTGC
GCGCCTACGCGGGCCTCGTGGGGTCCCCGCAGGCACCGCCGTCACCCCTAACTACGTGGACAACGTGAGC
GCGCGCGTGGCGCCCTGGTGCGACTGCGGAGCCAGCGGGAACCGGCGTGAGGACTGCGAAGCCTTCCGGG
GGCTCTTTACCAGGAACCGCTGCTTGGATGGTGCCATTCAGGCCTTTGCCAGCGGGTGGCCCCCAGTCCT
GCTGGACCAGCTGAACCCCCAGGGAGACCCGGAGCACAGCCTCCTGCAGGTGTCCTCCACAGGCAGGGCC
CTGGAGAGACGCTCCCTGCTCTCCATACTTCCTGTCCTGGCTCTCCCGGCCCTGCTCTGA

Translation (299 aa):
MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRR
FFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAFSGPGPAPPSCLEPLNFCERSRVCRCARAAAGPW
RGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDNVS
ARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRA
LERRSLLSILPVLALPALL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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