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Report for CCDS11341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11341.1 Public Homo sapiens 17 STARD3 24 110 108 CCDS HistoryNCBI Gene:10948Re-query CCDS DB by CCDS ID:11341.1Re-query CCDS DB by GeneID:10948See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336308.10 ENSP00000337446.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336308.10Link to Ensembl Protein Viewer:ENSP00000337446.5Re-query CCDS DB by Nucleotide ID:ENST00000336308Re-query CCDS DB by Protein ID:ENSP00000337446
Original member Current member NCBI NM_006804.4 NP_006795.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006804.4Link to Protein Sequence:NP_006795.3Re-query CCDS DB by Nucleotide ID:NM_006804Re-query CCDS DB by Protein ID:NP_006795Link to BLAST:NP_006795.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006795.3 445 Q14849-1 445 100% 0 0

Chromosomal Locations for CCDS 11341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39653532 39653750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39657008 39657085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39657775 39657852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39657973 39658026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39658405 39658522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39658722 39658820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39659051 39659106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39659461 39659553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660211 39660273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660431 39660526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660810 39660889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39660981 39661085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39662251 39662344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39662804 39662908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAGCAAGCTGCCCAGGGAGCTGACCCGAGACTTGGAGCGCAGCCTGCCTGCCGTGGCCTCCCTGGGCT
CCTCACTGTCCCACAGCCAGAGCCTCTCCTCGCACCTCCTTCCGCCGCCTGAGAAGCGAAGGGCCATCTC
TGATGTCCGCCGCACCTTCTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATC
GAACTGAATACCAACACAGGCATCCGTAAGAACTTGGAGCAGGAGATCATCCAGTACAACTTTAAAACTT
CCTTCTTCGACATCTTTGTCCTGGCCTTCTTCCGCTTCTCTGGACTGCTCCTAGGCTATGCCGTGCTGCG
GCTCCGGCACTGGTGGGTGATTGCGGTCACGACGCTGGTGTCCAGTGCATTCCTCATTGTCAAGGTCATC
CTCTCTGAGCTGCTCAGCAAAGGGGCATTTGGCTACCTGCTCCCCATCGTCTCTTTTGTCCTCGCCTGGT
TGGAGACCTGGTTCCTTGACTTCAAAGTCCTACCCCAGGAAGCTGAAGAGGAGCGATGGTATCTTGCCGC
CCAGGTTGCTGTTGCCCGTGGACCCCTGCTGTTCTCCGGTGCTCTGTCCGAGGGACAGTTCTATTCACCC
CCAGAATCCTTTGCAGGGTCTGACAATGAATCAGATGAAGAAGTTGCTGGGAAGAAAAGTTTCTCTGCTC
AGGAGCGGGAGTACATCCGCCAGGGGAAGGAGGCCACGGCAGTGGTGGACCAGATCTTGGCCCAGGAAGA
GAACTGGAAGTTTGAGAAGAATAATGAATATGGGGACACCGTGTACACCATTGAAGTTCCCTTTCACGGC
AAGACGTTTATCCTGAAGACCTTCCTGCCCTGTCCTGCGGAGCTCGTGTACCAGGAGGTGATCCTGCAGC
CCGAGAGGATGGTGCTGTGGAACAAGACAGTGACTGCCTGCCAGATCCTGCAGCGAGTGGAAGACAACAC
CCTCATCTCCTATGACGTGTCTGCAGGGGCTGCGGGCGGCGTGGTCTCCCCAAGGGACTTCGTGAATGTC
CGGCGCATTGAGCGGCGCAGGGACCGATACTTGTCATCAGGGATCGCCACCTCACACAGTGCCAAGCCCC
CGACGCACAAATATGTCCGGGGAGAGAATGGCCCTGGGGGCTTCATCGTGCTCAAGTCGGCCAGTAACCC
CCGTGTTTGCACCTTTGTCTGGATTCTTAATACAGATCTCAAGGGCCGCCTGCCCCGGTACCTCATCCAC
CAGAGCCTCGCGGCCACCATGTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGCTGGGGGCCC
GGGCGTGA

Translation (445 aa):
MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFDLLFISLLWII
ELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLRLRHWWVIAVTTLVSSAFLIVKVI
LSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEEERWYLAAQVAVARGPLLFSGALSEGQFYSP
PESFAGSDNESDEEVAGKKSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHG
KTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV
RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIH
QSLAATMFEFAFHLRQRISELGARA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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