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Report for CCDS10954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10954.1 Public Homo sapiens 16 EMC8 24 110 108 CCDS HistoryNCBI Gene:10328Re-query CCDS DB by CCDS ID:10954.1Re-query CCDS DB by GeneID:10328See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253457.8 ENSP00000253457.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253457.8Link to Ensembl Protein Viewer:ENSP00000253457.3Re-query CCDS DB by Nucleotide ID:ENST00000253457Re-query CCDS DB by Protein ID:ENSP00000253457
Original member Current member NCBI NM_006067.5 NP_006058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006067.5Link to Protein Sequence:NP_006058.1Re-query CCDS DB by Nucleotide ID:NM_006067Re-query CCDS DB by Protein ID:NP_006058Link to BLAST:NP_006058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006058.1 210 O43402-1 210 100% 0 0

Chromosomal Locations for CCDS 10954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85779708 85779867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85780379 85780473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85781211 85781280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85788974 85789050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85799065 85799295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGCCCGGGGTGAAACTGACCACCCAGGCCTACTGCAAGATGGTGCTGCACGGCGCCAAGTACCCGCACT
GCGCCGTCAACGGGCTCCTGGTGGCCGAGAAGCAGAAGCCGCGTAAGGAGCACCTCCCCCTGGGCGGCCC
CGGCGCCCACCACACCCTCTTCGTGGACTGCATCCCCCTCTTCCACGGCACCCTGGCCCTCGCCCCCATG
CTGGAGGTGGCTCTCACCCTGATTGATTCATGGTGCAAAGATCATAGCTACGTGATTGCTGGTTATTATC
AAGCTAATGAGCGAGTAAAGGATGCCAGTCCAAACCAGGTTGCAGAGAAGGTGGCCTCCAGAATCGCCGA
GGGCTTCAGCGACACTGCGCTCATCATGGTAGACAACACCAAGTTTACGATGGACTGCGTAGCGCCTACG
ATCCACGTGTACGAGCACCATGAGAACAGATGGCGGTGCAGAGACCCACACCATGACTACTGTGAAGACT
GGCCAGAGGCACAGAGGATCTCAGCCTCGCTCCTGGACAGCCGGTCCTACGAGACGCTCGTGGATTTCGA
TAACCACCTGGATGACATTCGGAATGACTGGACAAACCCAGAGATCAATAAAGCTGTCCTACACTTGTGC
TAG

Translation (210 aa):
MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPM
LEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVAPT
IHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEINKAVLHLC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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