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Report for CCDS10130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10130.1 Public Homo sapiens 15 SHC4 24 110 108 CCDS HistoryNCBI Gene:399694Re-query CCDS DB by CCDS ID:10130.1Re-query CCDS DB by GeneID:399694See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332408.9 ENSP00000329668.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332408.9Link to Ensembl Protein Viewer:ENSP00000329668.4Re-query CCDS DB by Nucleotide ID:ENST00000332408Re-query CCDS DB by Protein ID:ENSP00000329668
Original member Current member NCBI NM_203349.4 NP_976224.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203349.4Link to Protein Sequence:NP_976224.3Re-query CCDS DB by Nucleotide ID:NM_203349Re-query CCDS DB by Protein ID:NP_976224Link to BLAST:NP_976224.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_976224.3 630 Q6S5L8-1 630 100% 0 0

Chromosomal Locations for CCDS 10130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 48825971 48826126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48834769 48835022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48843409 48843588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48851188 48851248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48855953 48856124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48857692 48857815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48867818 48867869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48872089 48872142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48884248 48884367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48890748 48890811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48924879 48924949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 48962431 48963015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGCGAGAACGCGGCCAGGACAGCCTGGCAGGACTCGTGCTGTATGTAGGACTCTTCGGGCACCCCGGGA
TGCTGCACAGGGCCAAGTACAGCCGCTTTCGGAACGAGTCGATCACGTCCTTGGACGAAGGTAGCTCCGG
AGGCTCGGTCGGGAACAAGGGCTCGCCGCAGCCTCCCCACCCCGCCCTGGCACCTCACCTGCCGACTGAA
GATGCCACCTTGCCGTCGCAGGAGAGCCCCACCCCACTGTGCACCTTGATCCCCCGCATGGCAAGCATGA
AGCTGGCCAACCCGGCCACTTTGCTGAGTCTGAAAAACTTTTGCCTGGGTACCAAAGAGGTGCCTCGGCT
GAAGCTCCAGGAAAGCCGGGACCCAGGTTCCAGCGGCCCCTCTTCCCCAGAAACCAGTTTAAGTAGGTCC
GGGACTGCACCTCCACCGCAGCAGGACCTGGTGGGACACAGGGCAACCGCCCTAACCCCTGATTCGTGCC
CGCTTCCTGGCCCTGGGGAGCCAACACTTAGGAGCAGGCAGGACAGGCACTTTCTACAGCACCTGTTGGG
GATGGGCATGAACTACTGTGTGAGGTACATGGGCTGTGTTGAAGTGCTGCAATCAATGAGATCACTGGAT
TTTGGAATGAGAACCCAAGTTACAAGGGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATG
GAGCCATTAAAAAGCGAAAGCCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTT
TTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCACATTGATGAATCTTGACAACCAACAG
ATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCTGATACTACAGACTATG
TTGCCTACGTAGCTAAAGATCCAGTTAATCAACGAGCCTGTCACATATTGGAATGCCACAATGGAATGGC
CCAAGACGTCATAAGTACCATAGGGCAGGCTTTTGAACTCCGGTTTAAACAGTACTTGAAAAATCCTTCT
TTGAATACTTCTTGTGAAAGTGAGGAGGTGCATATTGATAGCCATGCCGAGGAGAGAGAAGATCATGAAT
ATTACAATGAAATTCCAGGGAAGCAGCCACCAGTAGGTGGTGTTTCAGATATGCGGATCAAAGTTCAAGC
CACGGAACAAATGGCTTACTGCCCCATACAGTGTGAAAAGTTGTGCTATTTGCCTGGAAACTCCAAGTGC
AGCAGTGTATATGAGAACTGTTTAGAACAAAGCAGGGCAATAGGTAATGTCCATCCAAGAGGGGTGCAGT
CCCAGCGAGATACCTCATTATTGAAGCACACGTGCCGAGTGGATCTCTTTGATGACCCCTGCTACATTAA
TACACAGGCTCTTCAAAGTACACCTGGCTCTGCTGGAAATCAAAGGTCAGCCCAACCACTGGGGAGCCCA
TGGCACTGCGGAAAGGCACCAGAAACTGTTCAGCCGGGTGCCACAGCCCAGCCTGCCAGCTCACATTCTT
TGCCACACATTAAGCAGCAGCTGTGGAGCGAAGAATGCTATCATGGCAAGCTGAGCAGGAAGGCGGCAGA
GAGCCTCTTGGTAAAGGATGGGGACTTTTTGGTTCGAGAGAGTGCAACATCCCCTGGCCAATATGTGCTG
AGTGGACTACAGGGAGGCCAAGCAAAACATCTTCTCCTGGTGGATCCTGAAGGCAAGGTGAGGACCAAGG
ATCATGTATTTGATAATGTCGGCCACCTTATCAGATACCATATGGATAACAGTTTGCCAATCATCTCCTC
TGGAAGCGAAGTAAGCCTTAAACAACCAGTGAGAAAAGATAATAATCCAGCACTTTTGCATTCCAACAAA
TGA

Translation (630 aa):
MRERGQDSLAGLVLYVGLFGHPGMLHRAKYSRFRNESITSLDEGSSGGSVGNKGSPQPPHPALAPHLPTE
DATLPSQESPTPLCTLIPRMASMKLANPATLLSLKNFCLGTKEVPRLKLQESRDPGSSGPSSPETSLSRS
GTAPPPQQDLVGHRATALTPDSCPLPGPGEPTLRSRQDRHFLQHLLGMGMNYCVRYMGCVEVLQSMRSLD
FGMRTQVTREAISRLCEAVPGANGAIKKRKPPVKFLSTVLGKSNLQFSGMNIKLTISTCSLTLMNLDNQQ
IIANHHMQSISFASGGDPDTTDYVAYVAKDPVNQRACHILECHNGMAQDVISTIGQAFELRFKQYLKNPS
LNTSCESEEVHIDSHAEEREDHEYYNEIPGKQPPVGGVSDMRIKVQATEQMAYCPIQCEKLCYLPGNSKC
SSVYENCLEQSRAIGNVHPRGVQSQRDTSLLKHTCRVDLFDDPCYINTQALQSTPGSAGNQRSAQPLGSP
WHCGKAPETVQPGATAQPASSHSLPHIKQQLWSEECYHGKLSRKAAESLLVKDGDFLVRESATSPGQYVL
SGLQGGQAKHLLLVDPEGKVRTKDHVFDNVGHLIRYHMDNSLPIISSGSEVSLKQPVRKDNNPALLHSNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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