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Report for CCDS10069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10069.1 Public Homo sapiens 15 VPS18 24 110 108 CCDS HistoryNCBI Gene:57617Re-query CCDS DB by CCDS ID:10069.1Re-query CCDS DB by GeneID:57617See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220509.10 ENSP00000220509.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220509.10Link to Ensembl Protein Viewer:ENSP00000220509.5Re-query CCDS DB by Nucleotide ID:ENST00000220509Re-query CCDS DB by Protein ID:ENSP00000220509
Original member Current member NCBI NM_020857.3 NP_065908.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020857.3Link to Protein Sequence:NP_065908.1Re-query CCDS DB by Nucleotide ID:NM_020857Re-query CCDS DB by Protein ID:NP_065908Link to BLAST:NP_065908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065908.1 973 Q9P253 973 100% 0 0

Chromosomal Locations for CCDS 10069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40894769 40894859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40895938 40896079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40898907 40898998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40899144 40901014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40902616 40903341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2922 nt):
ATGGCGTCCATCCTGGATGAGTACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTA
GCGTGGGCATCCCCCACTCGGGGTATGTGAATGCCCAGCTGGAGAAGGAAGTGCCCATCTTCACAAAGCA
GCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTGTGCATGAGC
CTGGGCAAGGATACACTGCTCCGCATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGAC
GTAAGGATGACGCAAAAGTTCACAAGATGTTCCTTGACCATACTGGCTCTCACCTGCTGATTGCCCTGAG
CAGCACGGAGGTCCTCTACGTGAACCGAAATGGACAGAAGGTACGGCCACTAGCACGCTGGAAGGGGCAG
CTGGTGGAGAGTGTGGGTTGGAACAAGGCACTGGGCACGGAGAGCAGCACAGGCCCCATCCTGGTCGGGA
CTGCCCAAGGCCACATCTTTGAAGCAGAGCTCTCAGCCAGCGAAGGTGGGCTTTTCGGCCCTGCTCCGGA
TCTCTACTTCCGCCCATTGTACGTGCTAAATGAAGAAGGGGGTCCAGCACCTGTGTGCTCCCTTGAGGCC
GAGCGGGGCCCTGATGGGCGTAGCTTTGTTATTGCCACCACTCGGCAGCGCCTCTTCCAGTTCATAGGCC
GAGCAGCAGAGGGGGCTGAGGCCCAGGGTTTCTCAGGGCTCTTTGCAGCTTACACGGACCACCCACCCCC
ATTCCGTGAGTTTCCCAGCAACCTGGGCTACAGTGAGTTGGCCTTCTACACCCCCAAGCTGCGCTCCGCA
CCCCGGGCCTTCGCCTGGATGATGGGGGATGGTGTGTTGTATGGGGCATTGGACTGTGGGCGCCCTGACT
CTCTGCTGAGCGAGGAGCGAGTCTGGGAGTACCCAGAGGGGGTAGGGCCTGGGGCCAGCCCACCCCTAGC
CATCGTCTTGACCCAGTTCCACTTCCTGCTGCTACTGGCAGACCGGGTGGAGGCAGTGTGCACACTGACC
GGGCAGGTGGTGCTGCGGGATCACTTCCTGGAGAAATTTGGGCCGCTGAAGCACATGGTGAAGGACTCCT
CCACAGGCCAGCTGTGGGCCTACACTGAGCGGGCTGTCTTCCGCTACCACGTGCAACGGGAGGCCCGAGA
TGTCTGGCGCACCTATCTGGACATGAACCGCTTCGATCTGGCCAAAGAGTATTGTCGAGAGCGGCCCGAC
TGCCTGGACACGGTCCTGGCCCGGGAGGCCGATTTCTGCTTTCGCCAGCGTCGCTACCTGGAGAGCGCAC
GCTGCTATGCCCTGACCCAGAGCTACTTTGAGGAGATTGCCCTCAAGTTCCTGGAGGCCCGACAGGAGGA
GGCTCTGGCTGAGTTCCTGCAGCGAAAACTGGCCAGTTTGAAGCCAGCCGAACGTACCCAGGCCACACTG
CTGACCACCTGGCTGACAGAGCTCTACCTGAGCCGGCTTGGGGCTCTGCAGGGCGACCCAGAGGCCCTGA
CTCTCTACCGAGAAACCAAGGAATGCTTTCGAACCTTCCTCAGCAGCCCCCGCCACAAAGAGTGGCTCTT
TGCCAGCCGGGCCTCTATCCATGAGCTGCTCGCCAGTCATGGGGACACAGAACACATGGTGTACTTTGCA
GTGATCATGCAGGACTATGAGCGGGTGGTGGCTTACCACTGTCAGCACGAGGCCTACGAGGAGGCCCTGG
CCGTGCTCGCCCGCCACCGTGACCCCCAGCTCTTCTACAAGTTCTCACCCATCCTCATCCGTCACATCCC
CCGCCAGCTTGTAGATGCCTGGATTGAGATGGGCAGCCGGCTGGATGCTCGTCAGCTCATTCCTGCCCTG
GTGAACTACAGCCAGGGTGGTGAGGTCCAGCAGGTGAGCCAGGCCATCCGCTACATGGAGTTCTGCGTGA
ACGTGCTGGGGGAGACTGAGCAGGCCATCCACAACTACCTGCTGTCACTGTATGCCCGTGGCCGGCCGGA
CTCACTACTGGCCTATCTGGAGCAGGCTGGGGCCAGCCCCCACCGGGTGCATTACGACCTCAAGTATGCG
CTGCGGCTCTGCGCCGAGCATGGCCACCACCGCGCTTGTGTCCATGTCTACAAGGTCCTAGAGCTGTATG
AGGAGGCCGTGGACCTGGCCCTGCAGGTGGATGTGGACCTGGCCAAGCAGTGTGCAGACCTGCCTGAGGA
GGATGAGGAATTGCGCAAGAAGCTGTGGCTGAAGATCGCACGGCACGTGGTGCAGGAAGAGGAAGATGTA
CAGACAGCCATGGCTTGCCTGGCTAGCTGCCCCTTGCTCAAGATTGAGGATGTGCTGCCCTTCTTTCCTG
ATTTCGTCACCATCGACCACTTCAAGGAGGCGATCTGCAGCTCACTTAAGGCCTACAACCACCACATCCA
GGAGCTGCAGCGGGAGATGGAAGAGGCTACAGCCAGTGCCCAGCGCATCCGGCGAGACCTGCAGGAGCTG
CGGGGCCGCTACGGCACTGTGGAGCCCCAGGACAAATGTGCCACCTGCGACTTCCCCCTGCTCAACCGCC
CTTTTTACCTCTTCCTCTGTGGCCATATGTTCCATGCTGACTGCCTGCTGCAGGCTGTGCGACCTGGCCT
GCCAGCCTACAAGCAGGCCCGGCTGGAGGAGCTGCAGAGGAAGCTGGGGGCTGCTCCACCCCCAGCCAAG
GGCTCTGCCCGGGCCAAGGAGGCCGAGGGTGGGGCTGCCACGGCAGGGCCCAGCCGGGAACAGCTCAAGG
CTGACCTGGATGAGTTGGTGGCCGCTGAGTGTGTGTACTGTGGGGAGCTGATGATCCGCTCTATCGACCG
GCCGTTCATCGACCCCCAGCGCTACGAGGAGGAGCAGCTCAGTTGGCTGTAG

Translation (973 aa):
MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMS
LGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQ
LVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGGLFGPAPDLYFRPLYVLNEEGGPAPVCSLEA
ERGPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSA
PRAFAWMMGDGVLYGALDCGRPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLT
GQVVLRDHFLEKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATL
LTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASRASIHELLASHGDTEHMVYFA
VIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPAL
VNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYA
LRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDV
QTAMACLASCPLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPAK
GSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEQLSWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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