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Report for CCDS94645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94645.1 Public Homo sapiens X RBM41 24 110 108 CCDS HistoryNCBI Gene:55285Re-query CCDS DB by CCDS ID:94645.1Re-query CCDS DB by GeneID:55285See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685964.1 ENSP00000509650.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685964.1Link to Ensembl Protein Viewer:ENSP00000509650.1Re-query CCDS DB by Nucleotide ID:ENST00000685964Re-query CCDS DB by Protein ID:ENSP00000509650
Original member Current member NCBI NM_001324242.2 NP_001311171.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001324242.2Link to Protein Sequence:NP_001311171.1Re-query CCDS DB by Nucleotide ID:NM_001324242Re-query CCDS DB by Protein ID:NP_001311171Link to BLAST:NP_001311171.1

Chromosomal Locations for CCDS 94645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107067527 107067693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107069255 107069402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107088436 107088839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107113397 107113468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107115352 107115556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107115862 107116054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107116650 107116766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107118766 107118773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAAGAGGGTAAACAGCTGTGTGAAGAGTGATGAGCATGTCCTGGAGGAGCTGGAAACAGAAGGGGAGA
GGCAGCTGAAAAGCCTCCTTCAGCATCAACTTGATACTTCTGTCTCCATTGAGGAATGTATGTCTAAGAA
AGAGAGCTTTGCTCCTGGTACTATGTACAAGCCCTTTGGGAAGGAAGCAGCTGGGACTATGACTTTGTCC
CAATTCCAGACACTGCATGAGAAGGACCAGGAAACTGCTTCTCTCAGGGAATTAGGGCTTAATGAAACAG
AAATCTTGATCTGGAAGAGCCATGTTTCTGGTGAAAAGAAGACAAAACTGAGGGCAACTCCTGAAGCAAT
ACAGAACCGTCTTCAAGATATTGAAGAAAGGATCTCGGAGCGTCAGCGCATTCTTTGCCTGCCACAGAGA
TTTGCAAAGAGCAAACAGCTGACCCGGCGAGAAATGGAAATAGAAAAGTCTTTATTTCAGGGAGCTGATC
GTCACTCCTTCCTTAAGGCTCTTTATTACCAAGCATACCACAAAAAGACAAGTGCAGACAAGTACATGAC
CTCAATGAAGAGGAAGATAAAATTAGGCACAAAAGATGAACCCCAAAAGAAGAACAAAGGTGATCCCATG
AACAACCTGGAAAGTTTTTACCAAGAGATGATAATGAAAAAACGTCTTGAAGAGTTTCAACTTATGAGAG
GTGAACCCTTTGCTTCCCACTCACTGGTCTCAGCTACATCAGTGGGTGATAGTGGCACAGCTGAGAGCCC
ATCATTACTCCAGGACAAGGGAAAACAGGCAGCACAGGGTAAAGGCCCCAGTCTCCATGTGGCAAATGTT
ATTGATTTTTCACCTGAGCAGTGTTGGACTGGGCCTAAGAAGCTGACGCAGCCAATAGAATTTGTCCCAG
AAGATGAAATCCAGAGAAATCGTTTGTCAGAGGAAGAGATCCGAAAAATTCCTATGTTTTCTTCATATAA
TCCAGGGGAACCAAACAAGGTATTATACCTGAAGAACCTTAGCCCTCGGGTGACTGAAAGAGATCTTGTG
TCATTGTTCGCTCGGTTCCAGGAGAAAAAAGGACCTCCAATTCAATTCCGAATGATGACTGGACGAATGA
GGGGCCAGGCTTTTATCACCTTTCCCAATAAGGAGATAGCATGGCAAGCATTGCATCTAGTAAATGGATA
CAAACTACATGGGAAAATATTGGTGATAGAGTTTGGAAAGAACAAAAAGCAACGGTCAAATCTCCAAGCG
ACTTCTCTCATATCATGTGCTACAGGTAGCACTACAGAAATTAGTGGTAGCTAG

Translation (437 aa):
MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECMSKKESFAPGTMYKPFGKEAAGTMTLS
QFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKKTKLRATPEAIQNRLQDIEERISERQRILCLPQR
FAKSKQLTRREMEIEKSLFQGADRHSFLKALYYQAYHKKTSADKYMTSMKRKIKLGTKDEPQKKNKGDPM
NNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAESPSLLQDKGKQAAQGKGPSLHVANV
IDFSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV
SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKNKKQRSNLQA
TSLISCATGSTTEISGS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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