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Report for CCDS94417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94417.1 Public Homo sapiens 9 PTAR1 24 110 108 CCDS HistoryNCBI Gene:375743Re-query CCDS DB by CCDS ID:94417.1Re-query CCDS DB by GeneID:375743See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377200.9 ENSP00000366405.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377200.9Link to Ensembl Protein Viewer:ENSP00000366405.5Re-query CCDS DB by Nucleotide ID:ENST00000377200Re-query CCDS DB by Protein ID:ENSP00000366405
Original member Current member NCBI NM_001366935.1 NP_001353864.1 Accepted alive Link to Nucleotide Sequence:NM_001366935.1Link to Protein Sequence:NP_001353864.1Re-query CCDS DB by Nucleotide ID:NM_001366935Re-query CCDS DB by Protein ID:NP_001353864Link to BLAST:NP_001353864.1

Chromosomal Locations for CCDS 94417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 69718342 69718684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69723326 69723630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69732139 69732352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69734150 69734254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69759853 69759938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCCGAGACCAGCGAGGAGGTGGCGGTGCTGGTGCAGCGGGTTGTGAAGGACATCACTAACGCCTTCA
GGAGGAACCCACACATGAAAGAGCTGATCCTCTCTGGCACTTTAAATCCAATTAAGGATTTACATCTGGG
AAAACTCGCCTTAACCAAGTTTCCAAAGAGTCCAGAAACATGGATTCACAGGCGATGGGTGCTACAACAG
CTAATTCAGGAAACCTCCTTGCCTTCCTTTGTGACCAAAGGAAACTTGGGAACAATTCCCACAGAAAGGG
CACAGCGACTCATACAAGAAGAGATGGAGGTCTGTGGTGAAGCAGCAGGGAGATACCCAAGCAACTATAA
TGCTTGGTCCCATCGCATCTGGGTTTTACAGCACTTGGCCAAGCTAGATGTCAAGATTCTTCTTGATGAA
CTATCTTCTACTAAACATTGGGCATCTATGCACGTTTCAGACCACAGTGGATTTCACTACCGCCAGTTTT
TGCTTAAGTCTTTGATTAGCCAAACTGTGATAGACAGTTCTGTGATGGAGCAAAATCCTTTGAGAAGTGA
GCCAGCCCTAGTTCCTCCAAAAGATGAAGAAGCAGCAGTTTCAACAGAAGAACCAAGGATTAATCTTCCC
CATCTTCTAGAAGAAGAAGTTGAATTCAGCACTGATCTTATTGATTCCTACCCAGGACATGAAACCCTTT
GGTGTCATAGGCGGCATATTTTCTACCTTCAGCATCACTTAAATGGTAGGTTTCCTCACAGCATGACCCA
GTTGTCACCTGCAGACAGCCCTGGGGGGACTTTGAGTGACTTGCACCTTATCCCAGCAGGCTCCCAGCTG
TCTCAAGCAATGGAAGTAGATGGACTGAATGACTCTAGCAAGCAAGGCTATTCCCAGGAAACCAAACGCC
TGAAGCGGACGCCAGTTCCAGACTCCCTAGGCCTAGAAATGGAGCACAGGTTCATTGATCAAGTATTGTC
CACCTGTCGGAACGTGGAGCAAGCCAGGTTTGCCAGTGCATACAGGAAATGGCTGGTTACTTTGAGTCAA
TGA

Translation (350 aa):
MAETSEEVAVLVQRVVKDITNAFRRNPHMKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQQ
LIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDE
LSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTEEPRINLP
HLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNGRFPHSMTQLSPADSPGGTLSDLHLIPAGSQL
SQAMEVDGLNDSSKQGYSQETKRLKRTPVPDSLGLEMEHRFIDQVLSTCRNVEQARFASAYRKWLVTLSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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