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Report for CCDS91384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91384.1 Public Homo sapiens 10 JAKMIP3 24 110 108 CCDS HistoryNCBI Gene:282973Re-query CCDS DB by CCDS ID:91384.1Re-query CCDS DB by GeneID:282973See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 91384.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000669493.1 ENSP00000499432.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000669493.1Link to Ensembl Protein Viewer:ENSP00000499432.1Re-query CCDS DB by Nucleotide ID:ENST00000669493Re-query CCDS DB by Protein ID:ENSP00000499432
Original member Current member NCBI NM_001392065.1 NP_001378994.1 Accepted alive Link to Nucleotide Sequence:NM_001392065.1Link to Protein Sequence:NP_001378994.1Re-query CCDS DB by Nucleotide ID:NM_001392065Re-query CCDS DB by Protein ID:NP_001378994Link to BLAST:NP_001378994.1

Chromosomal Locations for CCDS 91384.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 132104809 132104943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132117077 132117574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135047 132135160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132135930 132136076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137019 132137150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132137254 132137289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132138119 132138178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132140451 132140579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132141920 132142048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145107 132145190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132145518 132145580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132147952 132148050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149412 132149510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132149982 132150035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153759 132153827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132153913 132153990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132163209 132163412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132164670 132164735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 132166983 132167033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGTCCAAGAGGGGCATGAGCAGCCGGGCCAAGGGGGACAAGGCAGAGGCCCTCGCGGCGCTGCAGGCGG
CCAACGAGGATCTTCGAGCCAAGCTCACAGACATCCAGATCGAGCTGCAGCAGGAGAAGAGCAAGGTCAG
CAAAGTGGAACGCGAGAAGAACCAGGAGCTGCGGCAGGTGCGCGAGCATGAGCAGCATAAGACCGCGGTC
TTGCTCACGGAGCTCAAGACAAAGCTGCACGAGGAGAAGATGAAGGAGCTACAGGCTGTGCGTGAGACGC
TGCTGCGGCAGCATGAGGCTGAGCTGCTCAGGGTCATCAAGATCAAGGACAACGAGAACCAGCGGCTGCA
GGCACTGCTCAGTGCCCTGCGTGATGGCGGCCCCGAAAAGGTCAAGACCGTGCTGCTGTCCGAGGCCAAG
GAGGAGGCCAAGAAGGGGTTCGAGGTGGAGAAGGTCAAGATGCAGCAGGAGATCTCCGAGCTCAAGGGCG
CCAAAAGGCAGGTGGAGGAGGCGCTGACGCTGGTGATCCAAGCGGACAAGATCAAGGCCGCAGAGATCCG
CAGCGTGTACCACCTGCACCAGGAGGAGATCACCCGCATCAAGAAGGAGTGCGAGCGGGAGATCCGCAGG
CTGCAGTTGGATGAAAAAGATGCCCGGCGCTTCCAGCTTAAAATCGCGGAGTTAAGTGCGATTATCCGCA
AACTGGAGGACCGCAATGCATTGCTGTCGGAAGAGAGGAATGAGCTGTTGAAGCGCGTAAGAGAAGCTGA
GAGTCAGTACAAGCCTCTGCTGGATAAAAACAAGCGCCTCAGTCGGAAGAACGAGGATTTGTCTCATGCT
TTACGCCGAATGGAAAACAAGTTAAAATTTGTCACCCAGGAGAACATAGAAATGAGACAGAGAGCTGGAA
TCATACGGAGACCCAGTTCCTTGAATGACCTTGATCAAAGTCAGGATGAGAGAGAAGTCGATTTCTTGAA
GCTTCAGATTGTGGAGCAGCAAAACCTCATAGATGAACTGTCTAAGACCCTTGAGACCGCCGGCTACGTG
AAGAGCGTGTTAGAGCGGGACAAGCTGTTAAGATTCCGGAAGCAAAGAAAGAAAATGGCAAAACTTCCCA
AGCCGGTGGTTGTGGAGACCTTCTTTGGATACGACGAAGAGGCTTCCCTGGAATCCGACGGCTCCTCCGT
CTCTTACCAAACAGACAGGACGGACCAGACCCCGTGCACCCCGGACGATGACTTGGAGGAGGGCATGGCC
AAGGAGGAGACGGAGCTGAGGTTCCGGCAGCTGACCATGGAGTACCAGGCCCTGCAGCGTGCCTACGCTT
TGTTGCAGGAGCAGGTTGGAGGGACGCTGGACGCAGAGCGAGAAGTTAAGACCCGTGAGCAGCTACAAGC
CGAAGTGCAGAGGGCACAGGCGCGGATAGAGGACCTGGAGAAGGCCCTGGCGGAGCAGGGGCAGGATATG
AAGTGGATTGAAGAGAAGCAGGCACTGTACCGGAGAAATCAAGAGCTTGTGGAAAAGATCAAACAAATGG
AGACGGAAGAGGCTCGGCTCAGACACGAGGTGCAGGACGCCAGAGACCAAAACGAGCTGCTGGAGTTCAG
GATCCTGGAGCTTGAGGAGAGGGAGAGGAAGTCACCCGCCATCAGCTTCCACCACACGCCCTTCGTGGAC
GGGAAGAGCCCCCTCCAGGTGTACTGCGAGGCCGAAGGTGTGACGGACATTGTGGTTGCGGAGCTGATGA
AGAAGCTGGACATCCTGGGCGATAACGCCTGGCTCCAGCAGATTGAGGAGACAGAGGCGGCGCTGCAGCG
GAAGATGGTGGATCTGGAGAGCGAGAAGGAGCTGTTCAGTAAGCAGAAGGGCTACCTGGACGAGGAGCTG
GACTACCGGAAACAGGCCTTGGACCAGGCCAACAAGCACATCCTGGAGCTGGAAGCCATGCTGTATGATG
CCCTGCAGCAGGAGGCCGGGGCTAAGGTGGCTGAGCTGCTGTCAGAGGAGGAGCGCGAGAAGCTCAAGGT
GGCCGTGGAGCAGTGGAAGCGCCAGGTCATGAGTGAGCTGCGCGAGCGGGACGCCCAGATCCTGCGGGAG
CGCATGGAGCTGCTGCAGCTGGCTCAGCAGAGAATTAAAGAGTTAGAAGAAAGAATAGAAGCTCAGAAGA
GACAAATAAAGGAACTGGAGGAAAAGTTTCTATTTTTGTTCTTATTTTTCTCCTTAGCTTTCATTCTCTG
GTCATAG

Translation (748 aa):
MSKRGMSSRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHKTAV
LLTELKTKLHEEKMKELQAVRETLLRQHEAELLRVIKIKDNENQRLQALLSALRDGGPEKVKTVLLSEAK
EEAKKGFEVEKVKMQQEISELKGAKRQVEEALTLVIQADKIKAAEIRSVYHLHQEEITRIKKECEREIRR
LQLDEKDARRFQLKIAELSAIIRKLEDRNALLSEERNELLKRVREAESQYKPLLDKNKRLSRKNEDLSHA
LRRMENKLKFVTQENIEMRQRAGIIRRPSSLNDLDQSQDEREVDFLKLQIVEQQNLIDELSKTLETAGYV
KSVLERDKLLRFRKQRKKMAKLPKPVVVETFFGYDEEASLESDGSSVSYQTDRTDQTPCTPDDDLEEGMA
KEETELRFRQLTMEYQALQRAYALLQEQVGGTLDAEREVKTREQLQAEVQRAQARIEDLEKALAEQGQDM
KWIEEKQALYRRNQELVEKIKQMETEEARLRHEVQDARDQNELLEFRILELEERERKSPAISFHHTPFVD
GKSPLQVYCEAEGVTDIVVAELMKKLDILGDNAWLQQIEETEAALQRKMVDLESEKELFSKQKGYLDEEL
DYRKQALDQANKHILELEAMLYDALQQEAGAKVAELLSEEEREKLKVAVEQWKRQVMSELRERDAQILRE
RMELLQLAQQRIKELEERIEAQKRQIKELEEKFLFLFLFFSLAFILWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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