CCDS Report for Consensus CDS

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Report for CCDS90513.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
90513.1	Public	Mus musculus	9	Ilf3	23	108	98

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90513.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000213518.1	ENSMUSP00000150280.1	Accepted	alive
		NCBI	NM_001277321.1	NP_001264250.1	Accepted	alive

Chromosomal Locations for CCDS 90513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)

Genome Browser links:

Chromosome	Start	Stop
9	21387795	21387797
9	21388112	21388150
9	21388524	21388753
9	21389306	21389483
9	21392295	21392442
9	21393711	21393802
9	21394195	21394290
9	21394831	21394942
9	21395371	21395468
9	21396020	21396131
9	21396217	21396327
9	21397469	21397668
9	21397969	21398136
9	21399125	21399250
9	21399416	21399592
9	21399685	21399841
9	21399960	21400013
9	21403136	21403501
9	21404060	21404182
9	21404696	21404832

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGCATTGTATCATCATCACTTCATCACAAGAAGAAGAAGGCGTCCCATGAGAATTTTTGTGAATGATG ATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACAT GGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGC GAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGGGGAACAGA AGGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGCGGGTCGGCCTGGTAGCCAAGGGTCTTCTGCT CAAGGGGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAAGGAGAAGCCCACAACCGCCCTTCTGGACAAG GTGGCTGACAACCTGGCCATCCAGCTCACTACTGTAACAGAAGACAAGTATGAAATACTCCAGTCTGTGG ATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCC TGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAGAAACGCTATCAGTCAACGATCCCCCGGACGTT CTGGACAGGCAGAAATGCCTTGCTGCCTTGGCGTCCCTCCGACACGCCAAGTGGTTCCAGGCCAGAGCCA ATGGACTGAAGTCATGTGTCATTGTCATCCGTGTCCTAAGGGACTTGTGTACCCGAGTGCCCACCTGGGG TCCCCTCAGAGGATGGCCTCTGGAGCTGCTGTGTGAGAAGTCCATCGGCACTGCCAATAGGCCAATGGGT GCTGGTGAAGCCCTGCGGAGAGTGCTGGAGTGCCTGGCATCCGGCATCGTAATGCCAGATGGTTCTGGCA TTTATGACCCTTGTGAAAAAGAAGCCACTGATGCTATTGGGCATCTAGACAGACAGCAACGGGAAGATAT CACACAGAGTGCGCAGCATGCTCTGCGGCTTGCTGCCTTTGGTCAACTCCATAAAGTACTGGGAATGGAC CCCCTGCCTTCCAAAATGCCCAAGAAACCAAAGAACGAGAACCCGGTGGACTACACTGTTCAAATTCCTC CCAGCACCACCTATGCTATCACACCCATGAAACGCCCTATGGAAGAGGATGGGGAGGAGAAGTCTCCCAG CAAGAAGAAAAAGAAGATCCAGAAGAAAGAGGAGAAGGCTGATCCTCCTCAAGCTATGAATGCCCTGATG AGGTTAAATCAGCTGAAGCCAGGGCTGCAGTACAAGCTGATCTCCCAGACAGGCCCTGTTCATGCTCCCA TCTTCACCATGTCTGTGGAGGTAGACGGCAGTAACTTCGAGGCCTCGGGGCCATCTAAAAAGACTGCCAA GCTTCATGTAGCTGTGAAGGTGTTACAGGACATGGGCTTGCCAACAGGCGCTGAAGGCAGAGACTCCAGC AAGGGGGAAGACTCCGCTGAGGAGTCAGATGGGAAGCCAGCAATAGTGGCCCCACCCCCTGTGGTGGAAG CTGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCACTACTGAGCAGGGACCGATTTTGACTAAGCA TGGCAAGAACCCTGTTATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTGAGACG GGGGGCAGCCACGACAAAAGGTTTGTTATGGAGGTTGAGGTGGACGGACAGAAGTTTCAAGGTGCTGGTT CAAACAAAAAGGTGGCAAAGGCTTATGCTGCACTTGCCGCATTAGAAAAACTTTTCCCTGATACCCCTCT TGCTCTTGAAGCCAACAAAAAGAAAAGGACCCCAGTACCTGTCCGAGGTGGACCCAAATTTGCTGCCAAG CCACACAACCCTGGTTTTGGCATGGGAGGCCCCATGCATAATGAAGTGCCGCCACCTCCTAACATCCGAG GTCGGGGCCGAGGAGGTAACATCCGAGGGCGAGGACGGGGGCGAGGATTTGGTGGCGCCAACCATGGAGG AGGCTACATGAATGCTGGTGCTGGATATGGAAGCTATGGGTACAGCAGCAATTCGGCCACAGCAGGCTAC AGTCAGTTCTACAGCAATGGAGGGCATTCTGGGAATGCCGGTGGTGGAGGCAGCGGGGGAGGTGGTGGCT CATCCAGCTACAGCTCCTACTACCAAGGAGACAGCTACAACTCACCAGTACCCCCGAAGCATGCTGGGAA GAAGCCGCTGCATGGGGGCCAGCAGAAAGCCTCCTACAGCTCGGGCTACCAGTCCCACCAGGGCCAGCAG CAACCTTACAACCAGAGCCAGTACAGCAGCTACGGCACGCCACAGGGCAAGCAGAAAGGCTATGGCCATG GGCAGGGCAGCTACTCCTCCTACTCCAACTCTTACAACTCCCCAGGTGGTGGTGGGGGCTCTGACTACAG CTACGACAGCAAATTCAACTACAGTGGGAGTGGAGGCCGGAGTGGAGGCAACAGCTATGGCTCCAGCGGG TCATCGTCCTACAACACAGGCTCACATGGAGGCTATGGCACAGGCTCCGGAGGCAGCTCTTCATACCAAG GAGGCTACTCATCACAGTCAAACTACAGCTCACCTGGGTCCAGCCAGAGCTACAGTGGTCCTGCCAGCTC CTACCAGTCCTCACAGGGTGGCTACAGTCGGAACACAGAGCACAGCATGAACTACCAGTACAGATAA
Translation (908 aa):
MALYHHHFITRRRRRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNS ELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDK VADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDV LDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMG AGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD PLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKADPPQAMNALM RLNQLKPGLQYKLISQTGPVHAPIFTMSVEVDGSNFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSS KGEDSAEESDGKPAIVAPPPVVEAVSNPSSVFPSDATTEQGPILTKHGKNPVMELNEKRRGLKYELISET GGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALEANKKKRTPVPVRGGPKFAAK PHNPGFGMGGPMHNEVPPPPNIRGRGRGGNIRGRGRGRGFGGANHGGGYMNAGAGYGSYGYSSNSATAGY SQFYSNGGHSGNAGGGGSGGGGGSSSYSSYYQGDSYNSPVPPKHAGKKPLHGGQQKASYSSGYQSHQGQQ QPYNQSQYSSYGTPQGKQKGYGHGQGSYSSYSNSYNSPGGGGGSDYSYDSKFNYSGSGGRSGGNSYGSSG SSSYNTGSHGGYGTGSGGSSSYQGGYSSQSNYSSPGSSQSYSGPASSYQSSQGGYSRNTEHSMNYQYR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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