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Report for CCDS90125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90125.1 Public Mus musculus 6 Cracr2a 23 108 98 CCDS HistoryNCBI Gene:381812Re-query CCDS DB by CCDS ID:90125.1Re-query CCDS DB by GeneID:381812See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 90125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212051.1 ENSMUSP00000148569.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212051.1Link to Ensembl Protein Viewer:ENSMUSP00000148569.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212051Re-query CCDS DB by Protein ID:ENSMUSP00000148569
Original member Current member NCBI NM_001368877.1 NP_001355806.1 Accepted alive Link to Nucleotide Sequence:NM_001368877.1Link to Protein Sequence:NP_001355806.1Re-query CCDS DB by Nucleotide ID:NM_001368877Re-query CCDS DB by Protein ID:NP_001355806Link to BLAST:NP_001355806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355806.1 726 Q3UP38-2 726 100% 0 0

Chromosomal Locations for CCDS 90125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127603863 127604072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127607190 127607301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127608563 127608746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127611386 127611532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127625835 127625925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127629739 127629834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127631800 127631987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127636533 127636604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127639164 127639209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127641207 127641313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127644450 127644783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127649845 127649977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127657644 127657725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127657810 127657924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127665057 127665158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127667586 127667662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127669043 127669127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGGCCACCCCCAGTGGAAGAGAAGACTCCAGCTCCCAGACACCAGGTCATGGGAAGCAGGGAAGTGGAG
CCTGCGTGGAGCAACTGGACCACCCGGAGAAGCTGGAGGTGGAGATGCCAGACCAGAGTGCCATGTGGAA
GAAAGCACAGGAATTCTTCCAGACCTGTGACTCCGAGGGCAAGGGCTTCATTGCCAGGACAGACATGCAG
AGGCTGCATCAGGAGTTGCCCCTAAGTCTAGAAGAATTGGAAGATGTGTTTGACGCCCTGGATGCTGATG
GCAATGGCTTTCTGACCCCAGAAGAGTTCACCACTGGATTTAGTCACTTCTTCTTCAGTCAAAATATCCA
AGGAGAGGAAGAAGCTGACCAGCAGGTGGCCCAGCTCCAAGAGGAGAAAGTGTATCAGTCTAGAGGGGAG
GAGGATGTGGGAGACATGGACCATGATGAAGAAGCACAATTTCAGATGCTGATGGACAGACTTGGAGCCC
AGAAAGTTCTGGAAGATGAAAGTGACGTCAGGCAGCTGTGGCTGCAGCTGAGGAAGGACGAGCCCCACCT
GCTGTCCAACTTCGAAGACCTCCTCACCACAATTTTTGCTCAGCTCCAAGAAGCCCATGAGCAGAAGAAC
GAACTGGAATGTGCCCTCAGAAAGAAAATTGCTGCTTACGATGAAGAAATCCAGCATCTCTATGAGGAGA
TGGAGCAGCAGATCAAAAGTGAGAGGGAGCAGTTCCTCCTGAAAGACACAGAGAGATTCCAGGCTCGCAG
CCGGGAGTTGGAAAAGAAGCTGAGCGCCAAGGAGCAGGAGCTGGAGCGACTCAATCAGAAGCAGAGGAAG
CTGGAAGGCCAGTGTGCAGCTCTACACAACGACAAGCACGAAACCAAGGCTGAGAACAGCAAGCTGAGAC
TCACTAACCAGGAGCTGGCCCGGGAGTTGGAGCGCACCTCCCACCAACTCCAGGAGGCCCAGCAGCAGCT
GGAGAGCCTCCAGAGAGAGGCCTGCGAGCTGCAGCAGGAGAAGGAGATGGAAGTGTACCGAGTGACTGAA
AGCCTGCAGCGGGAGAAGTCTGGCCTCCTGAAACAGCTGGATTTCCTAAGGGAAAGGAACAAACATCTCC
GGGACGAACGGGACATAACTTTCCAGAAAGATAAGGCGGCCAAGGCAAACACAGCTGCTTCCAAGGCAAG
CAGGAAGCAAAGATCTGGCTCTGTGATCGGCAAATACGTGGATGGCAGGGGAATTCTCAGGAGCCAGTCA
GAGGAGGAGGAAGACGTATTCAGCGCCCCCAGGAGGAGAAGCTCAGTGGGTCTGAGTGCATATCTCCAGG
CAGAAGAGGACCTGGGAACTGGGGAGCCAGGGTCTGGTGTTCCACGTCGCCAGGCACTCCGAAGGATCAT
CTCCATTGAGGAGGATCCCCTGCCTCAGCTCCTGGAAGGAGGCTTTGAGAAGCCACTGAGCAGATGCCCA
GAAGAGGAGGAGGTCTCTGACCAGGGAACAGAAAGACAAAGCGTGGCAGCCCCAGTCTTGGATCTCATCC
CTACCTCTCCCCGAGGGCAGCCTGTTGGAAAAGAGACCCTCTACAAGGAGGAAAGGGTCCCCTCTACCCC
TGACCGGCTCTTTAAGATCGTGTTTGTGGGTGACTCTGCTGTAGGGAAGACATCCTTCCTGAGGAGACTC
TGTGAGGCCCGCTTCTCCCCAGGCATGGCGGCCACTGTGGGCATCGACTACCGAGTGAAGACAGTCACTG
TGGACAACGCACAGGTGGCCCTGCAGCTGTGGGATACTGCTGGGCAGGAGAGATATCGCTGTATCAGTCA
GCAGTTCTTCAGAAAGGCCGACGGTGTGGCTGTTATGTATGACCTCACAGCCAAGCAGTCCTTCCTGTCG
ATCCGCCAGTGGCTCAGCAGCGTGGAGGAAGCTGTGGGAGACCGAATTCCTGTTCTGCTGCTGGGCAATA
AACTTGACAATGAGAAGGAGCGGGAAGTGCCCCGGGGCCTGGGAGAGCAACTCGCCAAGGAGAACAATTT
GATCTTCTATGAATGCAGTGCCTGTTCGGGTCACAACGCCCAAGAGTCCCTGCTCCACCTGGCCAGGTTA
CTCAAGGAGCAAGAGGACACAGTGAGAAACGACACCATTCAGGTTGGCCCCCCTGCGAAGAAGAAATCCT
GTTGTGGCTGA

Translation (726 aa):
MATPSGREDSSSQTPGHGKQGSGACVEQLDHPEKLEVEMPDQSAMWKKAQEFFQTCDSEGKGFIARTDMQ
RLHQELPLSLEELEDVFDALDADGNGFLTPEEFTTGFSHFFFSQNIQGEEEADQQVAQLQEEKVYQSRGE
EDVGDMDHDEEAQFQMLMDRLGAQKVLEDESDVRQLWLQLRKDEPHLLSNFEDLLTTIFAQLQEAHEQKN
ELECALRKKIAAYDEEIQHLYEEMEQQIKSEREQFLLKDTERFQARSRELEKKLSAKEQELERLNQKQRK
LEGQCAALHNDKHETKAENSKLRLTNQELARELERTSHQLQEAQQQLESLQREACELQQEKEMEVYRVTE
SLQREKSGLLKQLDFLRERNKHLRDERDITFQKDKAAKANTAASKASRKQRSGSVIGKYVDGRGILRSQS
EEEEDVFSAPRRRSSVGLSAYLQAEEDLGTGEPGSGVPRRQALRRIISIEEDPLPQLLEGGFEKPLSRCP
EEEEVSDQGTERQSVAAPVLDLIPTSPRGQPVGKETLYKEERVPSTPDRLFKIVFVGDSAVGKTSFLRRL
CEARFSPGMAATVGIDYRVKTVTVDNAQVALQLWDTAGQERYRCISQQFFRKADGVAVMYDLTAKQSFLS
IRQWLSSVEEAVGDRIPVLLLGNKLDNEKEREVPRGLGEQLAKENNLIFYECSACSGHNAQESLLHLARL
LKEQEDTVRNDTIQVGPPAKKKSCCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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