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Report for CCDS90046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90046.1 Public Mus musculus 6 Hnrnpa2b1 23 108 98 CCDS HistoryNCBI Gene:53379Re-query CCDS DB by CCDS ID:90046.1Re-query CCDS DB by GeneID:53379See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114459.7 ENSMUSP00000110103.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114459.7Link to Ensembl Protein Viewer:ENSMUSP00000110103.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114459Re-query CCDS DB by Protein ID:ENSMUSP00000110103
Original member Current member EBI ENSMUST00000203954.2 ENSMUSP00000145028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203954.2Link to Ensembl Protein Viewer:ENSMUSP00000145028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203954Re-query CCDS DB by Protein ID:ENSMUSP00000145028
Current member NCBI NM_001374745.1 NP_001361674.1 Accepted alive Link to Nucleotide Sequence:NM_001374745.1Link to Protein Sequence:NP_001361674.1Re-query CCDS DB by Nucleotide ID:NM_001374745Re-query CCDS DB by Protein ID:NP_001361674Link to BLAST:NP_001361674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361674.1 353 O88569-1 353 100% 0 0

Chromosomal Locations for CCDS 90046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 51463432 51463493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51464089 51464211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51464428 51464547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51465179 51465241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51466142 51466222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51466303 51466404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51466495 51466705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51466906 51467052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51467185 51467295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51467391 51467426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51469671 51469676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGAAAGCTCT
TTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGAAACTACTATGAGCAATGGGGAAAGCT
CACAGACTGTGTGGTTATGCGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGCTTTGTAACTTTCTCA
TCCATGGCCGAGGTTGACGCTGCCATGGCTGCAAGGCCCCATTCCATTGATGGCAGGGTAGTTGAGCCAA
AACGTGCTGTAGCAAGAGAGGAGTCTGGAAAACCAGGAGCCCATGTGACTGTGAAGAAGCTGTTTGTTGG
TGGAATTAAGGAAGATACTGAGGAACACCACCTTAGAGATTACTTTGAAGAGTATGGAAAAATTGATACT
ATTGAAATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATG
ATCCTGTGGATAAAATTGTCTTGCAAAAATATCACACCATAAATGGTCACAATGCAGAAGTTAGAAAGGC
ATTGTCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGGAAGAGGAGGAAACTTTGGTTTTGGG
GATTCTCGTGGTGGCGGTGGCAATTTTGGACCAGGACCAGGAAGCAACTTTAGGGGGGGATCTGATGGAT
ACGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGG
AGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGT
GGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTATGGAAGTGGAAGTTACAATGATTTTG
GAAATTATAACCAGCAGCCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGGGGTAGCAGGAACAT
GGGAGGACCATATGGTGGAGGGAACTATGGTCCTGGAGGAAGTGGAGGAAGTGGTGGCTATGGTGGAAGG
AGCAGATATTAA

Translation (353 aa):
MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS
SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT
IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFG
DSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQG
GGYGGGYDNYGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR
SRY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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